miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00445;mir-399;AAAA02017707.1/12909-13018 39946:Oryza sativa
           Indica Group
          Length = 110

 Score = 50.1 bits (25), Expect = 7e-06
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                        
Query: 92  tagccgtgcgtgccaaaggagaattgccc 120
           ||||| |||||||||||||||||||||||
Sbjct: 70  tagccatgcgtgccaaaggagaattgccc 98




>RF00445;mir-399;ABXC01002232.1/126477-126594 4558:Sorghum bicolor
           (sorghum)
          Length = 118

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 98  tgcgtgccaaaggagaattgccc 120
           |||||||||||||||||||||||
Sbjct: 84  tgcgtgccaaaggagaattgccc 106




>RF00445;mir-399;ABXC01006255.1/18853-18743 4558:Sorghum bicolor
           (sorghum)
          Length = 111

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 99  gcgtgccaaaggagaattgccc 120
           ||||||||||||||||||||||
Sbjct: 78  gcgtgccaaaggagaattgccc 99