miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00638;MIR159;EU548541.1/320-117 3702:Arabidopsis thaliana (thale
cress)
Length = 204
Score = 242 bits (122), Expect = 1e-63
Identities = 164/177 (92%), Gaps = 2/177 (1%)
Strand = Plus / Plus
Query: 4 gctccttatagttcaaacgagagtttagcagggtaaagaaaagctgctaagctatgaatc 63
|||||||| ||||||||| ||||| |||||||||||||||||||||||||||||| |||
Sbjct: 15 gctccttaaagttcaaacatgagttgagcagggtaaagaaaagctgctaagctatggatc 74
Query: 64 ccataagccctaatccttatatat--aaaaaggatttggttatatggcttacatatctca 121
|||||||||||||||||| || | ||||||||||||||||||||| || |||||||||
Sbjct: 75 ccataagccctaatccttgtaaagtaaaaaaggatttggttatatggattgcatatctca 134
Query: 122 ggagctttaacttgccctttaattgcttttactcttctttggattgaagggagctct 178
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 135 ggagctttaacttgccctttaatggcttttactcttctttggattgaagggagctct 191
>RF00638;MIR159;AC034107.5/26716-26923 3702:Arabidopsis thaliana
(thale cress)
Length = 208
Score = 73.8 bits (37), Expect = 7e-13
Identities = 61/69 (88%)
Strand = Plus / Plus
Query: 4 gctccttatagttcaaacgagagtttagcagggtaaagaaaagctgctaagctatgaatc 63
||||||| ||||||| ||| |||||||||||| ||| ||||||||||||||||| |||
Sbjct: 15 gctccttgaagttcaatggagggtttagcagggtgaagtaaagctgctaagctatggatc 74
Query: 64 ccataagcc 72
|||||||||
Sbjct: 75 ccataagcc 83
Score = 69.9 bits (35), Expect = 1e-11
Identities = 61/67 (91%), Gaps = 2/67 (2%)
Strand = Plus / Plus
Query: 113 catatctcaggagctttaacttgccc-tttaattgcttttactcttctttggattgaagg 171
||||||||||||||||| |||| ||| |||||| |||| ||||||||||||||||||||
Sbjct: 130 catatctcaggagctttcacttacccctttaatggcttc-actcttctttggattgaagg 188
Query: 172 gagctct 178
|||||||
Sbjct: 189 gagctct 195
>RF00638;MIR159;EU955086.1/295-527 4577:Zea mays
Length = 233
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 157 tctttggattgaagggagctct 178
||||||||||||||||||||||
Sbjct: 199 tctttggattgaagggagctct 220
>RF00638;MIR159;ABXC01001787.1/21430-21187 4558:Sorghum bicolor
(sorghum)
Length = 244
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 157 tctttggattgaagggagctct 178
||||||||||||||||||||||
Sbjct: 210 tctttggattgaagggagctct 231
>RF00638;MIR159;EU869041.1/17-203 39947:Oryza sativa Japonica Group
Length = 187
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 157 tctttggattgaagggagctct 178
||||||||||||||||||||||
Sbjct: 153 tctttggattgaagggagctct 174
>RF00638;MIR159;AP008207.1/17678032-17678305 39947:Oryza sativa
Japonica Group
Length = 274
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 157 tctttggattgaagggagctct 178
||||||||||||||||||||||
Sbjct: 240 tctttggattgaagggagctct 261
