miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00677;MIR168;BT069329.1/34-135 4577:Zea mays
Length = 102
Score = 113 bits (57), Expect = 3e-25
Identities = 64/65 (98%), Gaps = 1/65 (1%)
Strand = Plus / Plus
Query: 1 tcgcttgg-gcagatcgggacccgccgcccggccgacgggacggatcccgccttgcacca 59
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19 tcgcttggtgcagatcgggacccgccgcccggccgacgggacggatcccgccttgcacca 78
Query: 60 agtga 64
|||||
Sbjct: 79 agtga 83
>RF00677;MIR168;ABXC01002411.1/32850-32747 4558:Sorghum bicolor
(sorghum)
Length = 104
Score = 56.0 bits (28), Expect = 5e-08
Identities = 59/67 (88%), Gaps = 3/67 (4%)
Strand = Plus / Plus
Query: 1 tcgcttgg-gcagatcgggacccgccgcccggcc--gacgggacggatcccgccttgcac 57
|||||||| ||||||||||||| |||||| || |||||||| |||||||||||||||
Sbjct: 19 tcgcttggtgcagatcgggacctgccgccgtgctcggacgggacagatcccgccttgcac 78
Query: 58 caagtga 64
|||||||
Sbjct: 79 caagtga 85
>RF00677;MIR168;AP004886.3/116669-116566 39947:Oryza sativa
Japonica Group
Length = 104
Score = 54.0 bits (27), Expect = 2e-07
Identities = 60/67 (89%), Gaps = 3/67 (4%)
Strand = Plus / Plus
Query: 1 tcgcttgg-gcagatcgggacccgccgcc-cggccgacgggac-ggatcccgccttgcac 57
|||||||| |||||||||||||||||||| | || | |||| | ||||||||||||||||
Sbjct: 19 tcgcttggtgcagatcgggacccgccgccgccgctgccggggccggatcccgccttgcac 78
Query: 58 caagtga 64
|||||||
Sbjct: 79 caagtga 85
