miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00638;MIR159;EU548541.1/320-117 3702:Arabidopsis thaliana (thale
cress)
Length = 204
Score = 224 bits (113), Expect = 3e-58
Identities = 161/176 (91%), Gaps = 2/176 (1%)
Strand = Plus / Plus
Query: 3 gctccttatagttcaaacgagagtttagcggggtaaagaaaagctgctaagctatggata 62
|||||||| ||||||||| ||||| ||| |||||||||||||||||||||||||||||
Sbjct: 15 gctccttaaagttcaaacatgagttgagcagggtaaagaaaagctgctaagctatggatc 74
Query: 63 ccataagccctaatccttgtattg--aaaaaggacttggtaatatggcttgcatatctca 120
||||||||||||||||||||| | |||||||| ||||| |||||| ||||||||||||
Sbjct: 75 ccataagccctaatccttgtaaagtaaaaaaggatttggttatatggattgcatatctca 134
Query: 121 ggagctttaacttaccctttaattgcttttactcttctttggattgaagggagctc 176
||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 135 ggagctttaacttgccctttaatggcttttactcttctttggattgaagggagctc 190
>RF00638;MIR159;AC034107.5/26716-26923 3702:Arabidopsis thaliana
(thale cress)
Length = 208
Score = 75.8 bits (38), Expect = 2e-13
Identities = 61/66 (92%), Gaps = 2/66 (3%)
Strand = Plus / Plus
Query: 112 catatctcaggagctttaacttaccc-tttaattgcttttactcttctttggattgaagg 170
||||||||||||||||| |||||||| |||||| |||| ||||||||||||||||||||
Sbjct: 130 catatctcaggagctttcacttacccctttaatggcttc-actcttctttggattgaagg 188
Query: 171 gagctc 176
||||||
Sbjct: 189 gagctc 194
Score = 65.9 bits (33), Expect = 2e-10
Identities = 60/69 (86%)
Strand = Plus / Plus
Query: 3 gctccttatagttcaaacgagagtttagcggggtaaagaaaagctgctaagctatggata 62
||||||| ||||||| ||| ||||||| |||| ||| ||||||||||||||||||||
Sbjct: 15 gctccttgaagttcaatggagggtttagcagggtgaagtaaagctgctaagctatggatc 74
Query: 63 ccataagcc 71
|||||||||
Sbjct: 75 ccataagcc 83
>RF00638;MIR159;AY728395.1/6-170 3694:Populus trichocarpa
Length = 165
Score = 48.1 bits (24), Expect = 4e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 106 ggcttgcatatctcaggagcttta 129
||||||||||||||||||||||||
Sbjct: 101 ggcttgcatatctcaggagcttta 124
>RF00638;MIR159;AARH01017144.1/4716-4901 3694:Populus trichocarpa
Length = 186
Score = 48.1 bits (24), Expect = 4e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 106 ggcttgcatatctcaggagcttta 129
||||||||||||||||||||||||
Sbjct: 109 ggcttgcatatctcaggagcttta 132
>RF00638;MIR159;AASG02012489.1/1166-1359 3988:Ricinus communis
(castor bean)
Length = 194
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 105 tggcttgcatatctcaggagctt 127
|||||||||||||||||||||||
Sbjct: 116 tggcttgcatatctcaggagctt 138
>RF00638;MIR159;CAAP02007000.1/8870-9063 29760:Vitis vinifera
Length = 194
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 105 tggcttgcatatctcaggagct 126
||||||||||||||||||||||
Sbjct: 116 tggcttgcatatctcaggagct 137
