miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00690;MIR408;BABK01104206.1/188-52 34305:Lotus japonicus
Length = 137
Score = 73.8 bits (37), Expect = 3e-13
Identities = 37/37 (100%)
Strand = Plus / Plus
Query: 51 tgttgtggctctactcatgcactgcctcttccctggc 87
|||||||||||||||||||||||||||||||||||||
Sbjct: 82 tgttgtggctctactcatgcactgcctcttccctggc 118
>RF00690;MIR408;AC136840.24/84429-84307 3880:Medicago truncatula
(barrel medic)
Length = 123
Score = 67.9 bits (34), Expect = 2e-11
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 50 ctgttgtggctctactcatgcactgcctcttccctggc 87
|||||||||||| |||||||||||||||||||||||||
Sbjct: 67 ctgttgtggctccactcatgcactgcctcttccctggc 104
>RF00690;MIR408;AARH01001232.1/22611-22493 3694:Populus trichocarpa
Length = 119
Score = 58.0 bits (29), Expect = 2e-08
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 51 tgttgtggctctactcatgcactgcctcttccctggc 87
|||| ||||||||| ||||||||||||||||||||||
Sbjct: 64 tgttttggctctacccatgcactgcctcttccctggc 100
>RF00690;MIR408;AM434998.2/53932-53808 29760:Vitis vinifera
Length = 125
Score = 56.0 bits (28), Expect = 8e-08
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 48 agctgttgtggctctactcatgcactgcctcttccctggc 87
||||||| | ||||||| ||||||||||||||||||||||
Sbjct: 68 agctgtttttgctctacccatgcactgcctcttccctggc 107
>RF00690;MIR408;AASG02001473.1/22877-22996 3988:Ricinus communis
(castor bean)
Length = 120
Score = 52.0 bits (26), Expect = 1e-06
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 50 ctgttgtggctctactcatgcactgcctcttccctggc 87
||||| ||||||||| | ||||||||||||||||||||
Sbjct: 64 ctgttttggctctacccctgcactgcctcttccctggc 101
>RF00690;MIR408;AC235367.1/71602-71757 3847:Glycine max (soybean)
Length = 156
Score = 52.0 bits (26), Expect = 1e-06
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 50 ctgttgtggctctactcatgcactgcctcttccctggc 87
||||||||||| ||||||||||||||||||||||||
Sbjct: 101 ctgttgtggctacgctcatgcactgcctcttccctggc 138
>RF00690;MIR408;AF419552.1/68-193 3702:Arabidopsis thaliana (thale
cress)
Length = 126
Score = 50.1 bits (25), Expect = 5e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 59 ctctactcatgcactgcctcttccctggc 87
|||||| ||||||||||||||||||||||
Sbjct: 79 ctctacccatgcactgcctcttccctggc 107
