miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00648;MIR396;AARH01007577.1/181152-181286 3694:Populus
trichocarpa
Length = 135
Score = 210 bits (106), Expect = 3e-54
Identities = 112/114 (98%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaactgcacctattagatttatgttgatgttgttgtgcgatttgc 60
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||
Sbjct: 11 ttccacagctttcttgaactgcacctattagattaatgttgatgttgttgtgcgatatgc 70
Query: 61 catgaccatatgacattgtattcatttttgctgcggttcaataaagctgtggga 114
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71 catgaccatatgacattgtattcatttttgctgcggttcaataaagctgtggga 124
>RF00648;MIR396;AARH01002977.1/26105-26230 3694:Populus
trichocarpa
Length = 126
Score = 58.0 bits (29), Expect = 3e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaactgcacctatt 29
|||||||||||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaactgcacctatt 39
Score = 54.0 bits (27), Expect = 4e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 84 atttttgctgcggttcaataaagctgtggga 114
||||||| |||||||||||||||||||||||
Sbjct: 85 atttttgttgcggttcaataaagctgtggga 115
>RF00648;MIR396;AASG02007435.1/277-442 3988:Ricinus communis
(castor bean)
Length = 166
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaactgcacctatta 30
||||||||||||||||||||||| ||||||
Sbjct: 11 ttccacagctttcttgaactgcatctatta 40
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 92 tgcggttcaataaagctgtggga 114
|||||||||||||||||||||||
Sbjct: 133 tgcggttcaataaagctgtggga 155
>RF00648;MIR396;AP005056.2/134150-134304 39947:Oryza sativa
Japonica Group
Length = 155
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaactgcac 24
||||||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaactgcac 34
>RF00648;MIR396;ABIM01011222.1/24137-24037 3649:Carica papaya
(papaya)
Length = 101
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaactgca 23
|||||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaactgca 33
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 92 tgcggttcaataaagctgtggga 114
|||||||||||||||||||||||
Sbjct: 68 tgcggttcaataaagctgtggga 90
>RF00648;MIR396;AC006250.4/85478-85629 3702:Arabidopsis thaliana
(thale cress)
Length = 152
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaactgca 23
|||||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaactgca 33
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 92 tgcggttcaataaagctgtggga 114
|||||||||||||||||||||||
Sbjct: 119 tgcggttcaataaagctgtggga 141
>RF00648;MIR396;AC153121.15/56895-56790 3880:Medicago truncatula
(barrel medic)
Length = 106
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaactgca 23
|||||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaactgca 33
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 92 tgcggttcaataaagctgtggga 114
|||||||||||||||||||||||
Sbjct: 73 tgcggttcaataaagctgtggga 95
>RF00648;MIR396;AP010531.1/68027-68126 34305:Lotus japonicus
Length = 100
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaactgca 23
|||||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaactgca 33
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 92 tgcggttcaataaagctgtggga 114
|||||||||||||||||||||||
Sbjct: 67 tgcggttcaataaagctgtggga 89
>RF00648;MIR396;AM489352.2/7330-7448 29760:Vitis vinifera
Length = 119
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaactgca 23
|||||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaactgca 33
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 92 tgcggttcaataaagctgtggga 114
|||||||||||||||||||||||
Sbjct: 86 tgcggttcaataaagctgtggga 108
>RF00648;MIR396;EU941272.1/182-300 4577:Zea mays
Length = 119
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaactgca 23
|||||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaactgca 33
>RF00648;MIR396;ABXC01006376.1/116039-116148 4558:Sorghum bicolor
(sorghum)
Length = 110
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaactgca 23
|||||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaactgca 33
>RF00648;MIR396;ABXC01002982.1/44228-44122 4558:Sorghum bicolor
(sorghum)
Length = 107
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaactgca 23
|||||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaactgca 33
>RF00648;MIR396;AAAA02018332.1/10514-10398 39946:Oryza sativa
Indica Group
Length = 117
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaactgca 23
|||||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaactgca 33
