miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00638;MIR159;CR962124.2/16450-16257 3880:Medicago truncatula
(barrel medic)
Length = 194
Score = 163 bits (82), Expect = 1e-39
Identities = 150/170 (88%), Gaps = 2/170 (1%)
Strand = Plus / Plus
Query: 3 gagctttcttcagtccactcataggtggcagtaagatt-caattagctgccgactcattc 61
|||||||||| ||||||||||| |||| || ||||||| ||||||||||| |||||||||
Sbjct: 13 gagctttctttagtccactcatgggtgacaataagatttcaattagctgctgactcattc 72
Query: 62 atccaaatgctgagtagtg-atactcttaaagatactcatcaaatgagtgaatgatgcgg 120
||||||||| |||||| ||| | | ||||||||||||||||||||||||||||
Sbjct: 73 atccaaatgttgagtaaaatatatagaaacatatactcatcaaatgagtgaatgatgcgg 132
Query: 121 gagacaaattgattcttaagtttcctgtacttggactgaagggagctccc 170
|||||||||||| ||||||||||||| |||||||||||||||||||||||
Sbjct: 133 gagacaaattgaatcttaagtttcctatacttggactgaagggagctccc 182
>RF00638;MIR159;AY728409.1/1-184 3694:Populus trichocarpa
Length = 184
Score = 139 bits (70), Expect = 1e-32
Identities = 146/169 (86%), Gaps = 3/169 (1%)
Strand = Plus / Plus
Query: 3 gagctttcttcagtccactcataggtggcagtaagattcaattagctgccgactcattca 62
|||||||||||||||||||||| ||||| |||| |||| |||||||||||||||||||||
Sbjct: 12 gagctttcttcagtccactcatgggtggtagtaggatttaattagctgccgactcattca 71
Query: 63 tccaaatgctgagtagtgatactcttaaagat-actcatcaaatgagtgaatgatgcggg 121
||||||| |||||| | | | |||| || || ||||||||||||||||||||
Sbjct: 72 tccaaatactgagt--taaaggacaaggagattacccagtaaatgagtgaatgatgcggg 129
Query: 122 agacaaattgattcttaagtttcctgtacttggactgaagggagctccc 170
||||||||||| || |||| |||||||||||||||||||||||||||||
Sbjct: 130 agacaaattgaatcctaagcttcctgtacttggactgaagggagctccc 178
>RF00638;MIR159;AASG02019405.1/2563-2341 3988:Ricinus communis
(castor bean)
Length = 223
Score = 121 bits (61), Expect = 3e-27
Identities = 67/69 (97%)
Strand = Plus / Plus
Query: 102 aaatgagtgaatgatgcgggagacaaattgattcttaagtttcctgtacttggactgaag 161
||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||
Sbjct: 143 aaatgagtgaatgatgcgggagacaaattgaatcttaagcttcctgtacttggactgaag 202
Query: 162 ggagctccc 170
|||||||||
Sbjct: 203 ggagctccc 211
Score = 107 bits (54), Expect = 5e-23
Identities = 69/74 (93%)
Strand = Plus / Plus
Query: 3 gagctttcttcagtccactcataggtggcagtaagattcaattagctgccgactcattca 62
|||||||||||||||||||||| |||||| ||| |||| |||||||||||||||||||||
Sbjct: 13 gagctttcttcagtccactcatgggtggcggtaggatttaattagctgccgactcattca 72
Query: 63 tccaaatgctgagt 76
||||||| ||||||
Sbjct: 73 tccaaatactgagt 86
>RF00638;MIR159;BABK01011373.1/1521-1344 34305:Lotus japonicus
Length = 178
Score = 111 bits (56), Expect = 3e-24
Identities = 139/168 (82%), Gaps = 14/168 (8%)
Strand = Plus / Plus
Query: 3 gagctttcttcagtccactcataggtggcagtaagattcaattagctgccgactcattca 62
||||||||||||||||| |||| ||||| ||||| |||||||||||||||||||||||
Sbjct: 13 gagctttcttcagtccattcatgggtggttataagaatcaattagctgccgactcattca 72
Query: 63 tccaaatgctgagtagtgatactcttaaagatactcatcaaatgagtgaatgatgcggga 122
|||||||||||| | ||| || ||| |||||||||||||||||||||
Sbjct: 73 tccaaatgctgaat-gtg-------------tattcagtaaatgagtgaatgatgcggga 118
Query: 123 gacaaattgattcttaagtttcctgtacttggactgaagggagctccc 170
||||||||| ||||||| ||||||| ||||||||||||||||||||
Sbjct: 119 gacaaattgtatcttaagcttcctgttattggactgaagggagctccc 166
>RF00638;MIR159;AM458581.1/27231-27413 29760:Vitis vinifera
Length = 183
Score = 111 bits (56), Expect = 3e-24
Identities = 142/170 (83%), Gaps = 13/170 (7%)
Strand = Plus / Plus
Query: 3 gagctttcttcagtccactcataggtggcagtaagattcaattagctgccgact-cattc 61
|||||||||||||||||||||| |||||||||| |||| ||||||||||||||| |||||
Sbjct: 13 gagctttcttcagtccactcatgggtggcagtaggattgaattagctgccgactccattc 72
Query: 62 atccaaatgctgagtagtgatactcttaaaga-tactcatcaaatgagtgaatgatgcgg 120
|||||||| ||| | |||| || ||| || |||||| ||||||||||||
Sbjct: 73 atccaaatactg-----------tgttaaggactacccagtaaatgattgaatgatgcgg 121
Query: 121 gagacaaattgattcttaagtttcctgtacttggactgaagggagctccc 170
||||||||||| ||||||| | ||||| |||||||||||||||||||||
Sbjct: 122 gagacaaattggatcttaagctccctgtgcttggactgaagggagctccc 171
>RF00638;MIR159;EF091572.1/4-172 4081:Solanum lycopersicum
Length = 169
Score = 77.8 bits (39), Expect = 4e-14
Identities = 67/75 (89%), Gaps = 1/75 (1%)
Strand = Plus / Plus
Query: 96 ctcatcaaatgagtgaatgatgcgggag-acaaattgattcttaagtttcctgtacttgg 154
|||| ||| ||||||||||| ||||||| |||| |||| |||| || |||||||||||||
Sbjct: 95 ctcagcaactgagtgaatgaagcgggagtacaagttgagtcttgagcttcctgtacttgg 154
Query: 155 actgaagggagctcc 169
|||||||||||||||
Sbjct: 155 actgaagggagctcc 169
>RF00638;MIR159;EU549299.1/339-148 3702:Arabidopsis thaliana (thale
cress)
Length = 192
Score = 65.9 bits (33), Expect = 2e-10
Identities = 60/69 (86%)
Strand = Plus / Plus
Query: 102 aaatgagtgaatgatgcgggagacaaattgattcttaagtttcctgtacttggactgaag 161
|||||| ||||||||||| |||||||||||| |||| | || || | ||||||||||||
Sbjct: 112 aaatgaatgaatgatgcgagagacaaattgagtcttcacttctctatgcttggactgaag 171
Query: 162 ggagctccc 170
|||||||||
Sbjct: 172 ggagctccc 180
>RF00638;MIR159;AARH01001833.1/17947-18134 3694:Populus trichocarpa
Length = 188
Score = 65.9 bits (33), Expect = 2e-10
Identities = 60/69 (86%)
Strand = Plus / Plus
Query: 102 aaatgagtgaatgatgcgggagacaaattgattcttaagtttcctgtacttggactgaag 161
|||||| ||| |||||||||||||||||| | |||||| ||||| | |||||||||||
Sbjct: 108 aaatgaatgagtgatgcgggagacaaattaaatcttaaacttcctatcattggactgaag 167
Query: 162 ggagctccc 170
|||||||||
Sbjct: 168 ggagctccc 176
>RF00638;MIR159;AY922331.1/1646-1837 3702:Arabidopsis thaliana
(thale cress)
Length = 192
Score = 58.0 bits (29), Expect = 4e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 37 gattcaattagctgccgactcattcatccaaat 69
||||||||||||| |||||||||||||||||||
Sbjct: 47 gattcaattagcttccgactcattcatccaaat 79
>RF00638;MIR159;AY775965.1/635-826 13288:Thlaspi arvense
Length = 192
Score = 50.1 bits (25), Expect = 1e-05
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 41 caattagctgccgactcattcatccaaat 69
||||||||| |||||||||||||||||||
Sbjct: 51 caattagcttccgactcattcatccaaat 79
>RF00638;MIR159;AY775959.1/657-850 81985:Capsella rubella
Length = 194
Score = 50.1 bits (25), Expect = 1e-05
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 41 caattagctgccgactcattcatccaaat 69
||||||||| |||||||||||||||||||
Sbjct: 51 caattagcttccgactcattcatccaaat 79
Score = 44.1 bits (22), Expect = 6e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 102 aaatgagtgaatgatgcgggagacaaattg 131
|||||| |||||||||||| ||||||||||
Sbjct: 114 aaatgaatgaatgatgcggtagacaaattg 143
>RF00638;MIR159;AY775963.1/615-806 50459:Barbarea vulgaris (winter
cress)
Length = 192
Score = 50.1 bits (25), Expect = 1e-05
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 41 caattagctgccgactcattcatccaaat 69
||||||||| |||||||||||||||||||
Sbjct: 51 caattagcttccgactcattcatccaaat 79
Score = 46.1 bits (23), Expect = 2e-04
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 93 atactcatcaaatgagtgaatgatgcgggagacaaattg 131
|||||| | |||||| |||||||||||| ||||||||||
Sbjct: 103 atactcgttaaatgaatgaatgatgcggtagacaaattg 141
>RF00638;MIR159;AY775975.1/842-1033 3713:Brassica oleracea var.
acephala (kale)
Length = 192
Score = 48.1 bits (24), Expect = 4e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 41 caattagctgccgactcattcatccaaatgctgagt 76
||||||||| |||| |||||||||||||| ||||||
Sbjct: 51 caattagcttccgaatcattcatccaaatactgagt 86
>RF00638;MIR159;ABIM01001344.1/11584-11387 3649:Carica papaya
(papaya)
Length = 198
Score = 44.1 bits (22), Expect = 6e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 145 ctgtacttggactgaagggagctccc 170
|||| |||||||||||||||||||||
Sbjct: 161 ctgtgcttggactgaagggagctccc 186
>RF00638;MIR159;AY884227.1/8-182 3694:Populus trichocarpa
Length = 175
Score = 44.1 bits (22), Expect = 6e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 43 attagctgccgactcattcatccaaa 68
||||||||||||||||||||| ||||
Sbjct: 42 attagctgccgactcattcattcaaa 67
Score = 44.1 bits (22), Expect = 6e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 145 ctgtacttggactgaagggagctccc 170
|||| |||||||||||||||||||||
Sbjct: 147 ctgtgcttggactgaagggagctccc 172
>RF00638;MIR159;AARH01005879.1/28103-28306 3694:Populus
trichocarpa
Length = 204
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 42 aattagctgccgactcattcat 63
||||||||||||||||||||||
Sbjct: 54 aattagctgccgactcattcat 75
>RF00638;MIR159;AASG02011104.1/6116-5917 3988:Ricinus communis
(castor bean)
Length = 200
Score = 44.1 bits (22), Expect = 6e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 145 ctgtacttggactgaagggagctccc 170
|||| |||||||||||||||||||||
Sbjct: 163 ctgtgcttggactgaagggagctccc 188
>RF00638;MIR159;AM471650.2/47253-47061 29760:Vitis vinifera
Length = 193
Score = 44.1 bits (22), Expect = 6e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 43 attagctgccgactcattcatccaaa 68
||||||||||||||||||||| ||||
Sbjct: 54 attagctgccgactcattcattcaaa 79
Score = 44.1 bits (22), Expect = 6e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 145 ctgtacttggactgaagggagctccc 170
|||| |||||||||||||||||||||
Sbjct: 156 ctgtgcttggactgaagggagctccc 181
>RF00638;MIR159;EU946960.1/247-441 4577:Zea mays
Length = 195
Score = 44.1 bits (22), Expect = 6e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 42 aattagctgccgactcattcatccaaatgc 71
||||||||||||||||||||| ||| ||||
Sbjct: 52 aattagctgccgactcattcacccacatgc 81
>RF00638;MIR159;ABXC01001681.1/23904-24102 4558:Sorghum bicolor
(sorghum)
Length = 199
Score = 44.1 bits (22), Expect = 6e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 42 aattagctgccgactcattcatccaaatgc 71
||||||||||||||||||||| ||| ||||
Sbjct: 52 aattagctgccgactcattcacccacatgc 81
>RF00638;MIR159;AACV01000479.1/66279-66476 39947:Oryza sativa
Japonica Group
Length = 198
Score = 44.1 bits (22), Expect = 6e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 42 aattagctgccgactcattcatccaaatgc 71
||||||||||||||||||||| ||| ||||
Sbjct: 52 aattagctgccgactcattcacccacatgc 81
