miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00075;mir-166;ABIM01027778.1/13122-13246 3649:Carica papaya
(papaya)
Length = 125
Score = 63.9 bits (32), Expect = 5e-10
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 1 ggaatgttgtctggctcgaggtcatggaggag 32
||||||||||||||||||||||||||||||||
Sbjct: 8 ggaatgttgtctggctcgaggtcatggaggag 39
Score = 56.0 bits (28), Expect = 1e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 95 aaatgattctcggaccaggcttcattcc 122
||||||||||||||||||||||||||||
Sbjct: 91 aaatgattctcggaccaggcttcattcc 118
>RF00075;mir-166;AC189313.2/128870-128784 51351:Brassica rapa subsp.
pekinensis
Length = 87
Score = 56.0 bits (28), Expect = 1e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 95 aaatgattctcggaccaggcttcattcc 122
||||||||||||||||||||||||||||
Sbjct: 53 aaatgattctcggaccaggcttcattcc 80
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 5 tgttgtctggctcgaggtcatg 26
||||||||||||||||||||||
Sbjct: 12 tgttgtctggctcgaggtcatg 33
>RF00075;mir-166;EU548871.1/183-293 3702:Arabidopsis thaliana (thale
cress)
Length = 111
Score = 56.0 bits (28), Expect = 1e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 95 aaatgattctcggaccaggcttcattcc 122
||||||||||||||||||||||||||||
Sbjct: 77 aaatgattctcggaccaggcttcattcc 104
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 1 ggaatgttgtctggctcgaggtcatg 26
||||| ||||||||||||||||||||
Sbjct: 8 ggaatattgtctggctcgaggtcatg 33
>RF00075;mir-166;EU548914.1/298-397 3702:Arabidopsis thaliana (thale
cress)
Length = 100
Score = 56.0 bits (28), Expect = 1e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 95 aaatgattctcggaccaggcttcattcc 122
||||||||||||||||||||||||||||
Sbjct: 66 aaatgattctcggaccaggcttcattcc 93
Score = 50.1 bits (25), Expect = 7e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 1 ggaatgttgtctggctcgaggtcatggag 29
|||||||||| ||||||||||||||||||
Sbjct: 8 ggaatgttgtttggctcgaggtcatggag 36
>RF00075;mir-166;AL590346.1/40100-40217 3702:Arabidopsis thaliana
(thale cress)
Length = 118
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 97 atgattctcggaccaggcttcattcc 122
||||||||||||||||||||||||||
Sbjct: 86 atgattctcggaccaggcttcattcc 111
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 5 tgttgtctggctcgaggtcatg 26
||||||||||||||||||||||
Sbjct: 12 tgttgtctggctcgaggtcatg 33
>RF00075;mir-166;AARH01003279.1/141842-141699 3694:Populus
trichocarpa
Length = 144
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 1 ggaatgttgtctggctcgaggtcatggagg 30
||||||||||||||||||||||||| ||||
Sbjct: 8 ggaatgttgtctggctcgaggtcattgagg 37
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 97 atgattctcggaccaggcttcattcc 122
||||||||||||||||||||||||||
Sbjct: 112 atgattctcggaccaggcttcattcc 137
>RF00075;mir-166;FJ010939.2/353-450 52838:Musa balbisiana
Length = 98
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 1 ggaatgttgtctggctcgaggtcatg 26
||||||||||||||||||||||||||
Sbjct: 8 ggaatgttgtctggctcgaggtcatg 33
>RF00075;mir-166;AM464541.1/10325-10481 29760:Vitis vinifera
Length = 157
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 98 tgattctcggaccaggcttcattcc 122
|||||||||||||||||||||||||
Sbjct: 126 tgattctcggaccaggcttcattcc 150
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 ggaatgttgtctggctcgaggt 22
||||||||||||||||||||||
Sbjct: 8 ggaatgttgtctggctcgaggt 29
>RF00075;mir-166;AC216447.1/33715-33853 3694:Populus trichocarpa
Length = 139
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 95 aaatgattctcggaccaggcttcattcc 122
||||||||||||||||||||| ||||||
Sbjct: 105 aaatgattctcggaccaggctccattcc 132
>RF00075;mir-166;AARH01000156.1/300448-300294 3694:Populus
trichocarpa
Length = 155
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 ggaatgttgtctggctcgaggtca 24
||||||||||||||||||||||||
Sbjct: 8 ggaatgttgtctggctcgaggtca 31
>RF00075;mir-166;AASG02002547.1/1046-1166 3988:Ricinus communis
(castor bean)
Length = 121
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 ggaatgttgtctggctcgaggtca 24
||||||||||||||||||||||||
Sbjct: 8 ggaatgttgtctggctcgaggtca 31
>RF00075;mir-166;AP009261.1/72240-72093 4081:Solanum lycopersicum
Length = 148
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 ggaatgttgtctggctcgaggtca 24
||||||||||||||||||||||||
Sbjct: 8 ggaatgttgtctggctcgaggtca 31
>RF00075;mir-166;AY599420.1/1-185 4096:Nicotiana sylvestris (wood
tobacco)
Length = 185
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 ggaatgttgtctggctcgaggtca 24
||||||||||||||||||||||||
Sbjct: 6 ggaatgttgtctggctcgaggtca 29
>RF00075;mir-166;AC144592.26/52711-52605 3880:Medicago truncatula
(barrel medic)
Length = 107
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 100 attctcggaccaggcttcattcc 122
|||||||||||||||||||||||
Sbjct: 78 attctcggaccaggcttcattcc 100
>RF00075;mir-166;CT009488.4/103389-103285 3880:Medicago truncatula
(barrel medic)
Length = 105
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 100 attctcggaccaggcttcattcc 122
|||||||||||||||||||||||
Sbjct: 76 attctcggaccaggcttcattcc 98
>RF00075;mir-166;BABK01008352.1/1692-1590 34305:Lotus japonicus
Length = 103
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 101 ttctcggaccaggcttcattcc 122
||||||||||||||||||||||
Sbjct: 75 ttctcggaccaggcttcattcc 96
>RF00075;mir-166;EU956093.1/113-209 4577:Zea mays
Length = 97
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 ggaatgttgtctggctcgaggt 22
||||||||||||||||||||||
Sbjct: 8 ggaatgttgtctggctcgaggt 29
>RF00075;mir-166;ABXC01002952.1/108749-108653 4558:Sorghum bicolor
(sorghum)
Length = 97
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 ggaatgttgtctggctcgaggt 22
||||||||||||||||||||||
Sbjct: 8 ggaatgttgtctggctcgaggt 29
>RF00075;mir-166;AP008208.1/26148565-26148667 39947:Oryza sativa
Japonica Group
Length = 103
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 ggaatgttgtctggctcgaggt 22
||||||||||||||||||||||
Sbjct: 8 ggaatgttgtctggctcgaggt 29
