miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00247;mir-160;AARH01003540.1/65975-65890 3694:Populus
trichocarpa
Length = 86
Score = 87.7 bits (44), Expect = 2e-17
Identities = 69/76 (90%), Gaps = 1/76 (1%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgccattttcagagcccatcggtatttccaatggcctccgtggat 60
||||||||||||||||||||||| ||||||||| ||| || | |||||||||||||||
Sbjct: 5 gcctggctccctgtatgccatttgcagagcccaacgg-atcctcgatggcctccgtggat 63
Query: 61 ggcgtatgaggagcca 76
||||||||||||||||
Sbjct: 64 ggcgtatgaggagcca 79
>RF00247;mir-160;CAAP02000343.1/40092-40007 29760:Vitis vinifera
Length = 86
Score = 79.8 bits (40), Expect = 5e-15
Identities = 68/76 (89%), Gaps = 1/76 (1%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgccattttcagagcccatcggtatttccaatggcctccgtggat 60
||||||||||||||||||||||| ||||||||| ||| | | | ||||||| |||||||
Sbjct: 5 gcctggctccctgtatgccatttgcagagcccaccggcacat-cgatggccttcgtggat 63
Query: 61 ggcgtatgaggagcca 76
||||||||||||||||
Sbjct: 64 ggcgtatgaggagcca 79
>RF00247;mir-160;ABIM01012188.1/1387-1471 3649:Carica papaya
(papaya)
Length = 85
Score = 69.9 bits (35), Expect = 4e-12
Identities = 68/77 (88%), Gaps = 4/77 (5%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgccattttcagagcccatcg-gtatttccaatggcctccgtgga 59
||||||||||||||||||||||| ||||||||| || | || | |||||||||||||
Sbjct: 5 gcctggctccctgtatgccatttgcagagcccaccgagcatcgc---tggcctccgtgga 61
Query: 60 tggcgtatgaggagcca 76
|||||||||||||||||
Sbjct: 62 tggcgtatgaggagcca 78
>RF00247;mir-160;EU548617.1/275-359 3702:Arabidopsis thaliana
(thale cress)
Length = 85
Score = 69.9 bits (35), Expect = 4e-12
Identities = 68/77 (88%), Gaps = 4/77 (5%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgccattttcagagcccatcg-gtatttccaatggcctccgtgga 59
||||||||||||||||||||| | | |||||||||| |||| | ||| ||||||||||
Sbjct: 5 gcctggctccctgtatgccatatgctgagcccatcgagtat---cgatgacctccgtgga 61
Query: 60 tggcgtatgaggagcca 76
|||||||||||||||||
Sbjct: 62 tggcgtatgaggagcca 78
>RF00247;mir-160;BABK01026793.1/1193-1108 34305:Lotus japonicus
Length = 86
Score = 54.0 bits (27), Expect = 3e-07
Identities = 67/79 (84%), Gaps = 1/79 (1%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgccattttcagagcccatcggtatttccaatggcctccgtggat 60
||||||||||||||||||||||| ||||| ||||| | | ||||| ||| |||||
Sbjct: 5 gcctggctccctgtatgccatttggagagctcatcgaaacat-caatgatctctttggat 63
Query: 61 ggcgtatgaggagccaagc 79
|||||||||||||||||||
Sbjct: 64 ggcgtatgaggagccaagc 82
>RF00247;mir-160;AC126015.41/7942-7857 3880:Medicago truncatula
(barrel medic)
Length = 86
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 55 gtggatggcgtatgaggagccaagc 79
|||||||||||||||||||||||||
Sbjct: 58 gtggatggcgtatgaggagccaagc 82
>RF00247;mir-160;AASG02001090.1/34048-34133 3988:Ricinus communis
(castor bean)
Length = 86
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgccattt 23
|||||||||||||||||||||||
Sbjct: 5 gcctggctccctgtatgccattt 27
>RF00247;mir-160;AC148995.2/105120-105205 3880:Medicago truncatula
(barrel medic)
Length = 86
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgccattt 23
|||||||||||||||||||||||
Sbjct: 5 gcctggctccctgtatgccattt 27
>RF00247;mir-160;AC196190.2/61996-61908 4081:Solanum lycopersicum
Length = 89
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgccattt 23
|||||||||||||||||||||||
Sbjct: 5 gcctggctccctgtatgccattt 27
>RF00247;mir-160;CAAP02000723.1/67959-67874 29760:Vitis vinifera
Length = 86
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgccattt 23
|||||||||||||||||||||||
Sbjct: 5 gcctggctccctgtatgccattt 27
