miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;AACV01016079.1/9825-9954 39947:Oryza sativa
Japonica Group
Length = 130
Score = 54.0 bits (27), Expect = 2e-07
Identities = 45/51 (88%)
Strand = Plus / Minus
Query: 1 attctaacattttttatattcatattgatattaataaatttagatataaat 51
|||||| ||||| | |||||||||||||||||||| ||| || ||||||||
Sbjct: 99 attctagcatttctcatattcatattgatattaatgaatctaaatataaat 49
>RF00906;MIR1122;AP005688.3/36085-35944 39947:Oryza sativa
Japonica Group
Length = 142
Score = 54.0 bits (27), Expect = 2e-07
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 1 attctaacattttttatattcatattgatattaataaatttagatat 47
|||||| |||||| ||||||||||||||| ||||| ||| |||||||
Sbjct: 32 attctagcattttctatattcatattgatgttaatgaatctagatat 78
>RF00906;MIR1122;AP005764.5/63055-63194 39947:Oryza sativa
Japonica Group
Length = 140
Score = 52.0 bits (26), Expect = 1e-06
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 1 attctaacattttttatattcatattgatattaataaatttagata 46
||||||||||||| |||||||||||||| ||||| ||| ||||||
Sbjct: 32 attctaacattttccatattcatattgatgttaatgaatgtagata 77
>RF00906;MIR1122;FJ266024.1/267591-267730 39946:Oryza sativa
Indica Group
Length = 140
Score = 52.0 bits (26), Expect = 1e-06
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 1 attctaacattttttatattcatattgatattaataaatttagata 46
|||||| |||||| | ||| |||||||||||||||||||||||||
Sbjct: 32 attctagcattttccacatttatattgatattaataaatttagata 77
>RF00906;MIR1122;AAAA02030781.1/9759-9620 39946:Oryza sativa
Indica Group
Length = 140
Score = 52.0 bits (26), Expect = 1e-06
Identities = 54/63 (85%), Gaps = 4/63 (6%)
Strand = Plus / Minus
Query: 16 atattcatattgatattaataaatttaga----tataaatatgaatgtgagaaataatag 71
|||||||||||||| ||||||||| |||| ||||||| |||||||| |||||| |||
Sbjct: 94 atattcatattgatgttaataaatctagacatttataaatgtgaatgtgggaaatactag 35
Query: 72 aat 74
|||
Sbjct: 34 aat 32
>RF00906;MIR1122;AAAA02024103.1/2739-2606 39946:Oryza sativa Indica
Group
Length = 134
Score = 50.1 bits (25), Expect = 4e-06
Identities = 55/64 (85%), Gaps = 2/64 (3%)
Strand = Plus / Minus
Query: 3 tctaacattttttatattcatattgatattaataaatttagatataaatatgaatgtgag 62
||||||||||| | |||||||||||| ||||| ||| ||||||| |||||||| ||||
Sbjct: 101 tctaacattttccacattcatattgatgttaatgaatctagatat--atatgaatatgag 44
Query: 63 aaat 66
||||
Sbjct: 43 aaat 40
>RF00906;MIR1122;FJ266028.1/154978-155117 4529:Oryza rufipogon
Length = 140
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 22 atattgatattaataaatttagata 46
|||||||||||||||||||||||||
Sbjct: 53 atattgatattaataaatttagata 77
>RF00906;MIR1122;AC111015.2/7663-7824 39947:Oryza sativa Japonica
Group
Length = 162
Score = 48.1 bits (24), Expect = 2e-05
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 18 attcatattgatattaataaatttagatataaatat 53
|||||||||||||||||| ||| |||||||| ||||
Sbjct: 114 attcatattgatattaatgaatctagatatatatat 79
>RF00906;MIR1122;AACV01008600.1/18829-18668 39947:Oryza sativa
Japonica Group
Length = 162
Score = 46.1 bits (23), Expect = 6e-05
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 1 attctaacattttttatattcatattgatattaat 35
|||||| ||||||| | ||||||||||||||||||
Sbjct: 131 attctagcatttttcacattcatattgatattaat 97
>RF00906;MIR1122;AACV01021945.1/10278-10160 39947:Oryza sativa
Japonica Group
Length = 119
Score = 46.1 bits (23), Expect = 6e-05
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 18 attcatattgatattaataaatttagatata 48
|||||||||||||||||| ||| ||||||||
Sbjct: 71 attcatattgatattaatgaatctagatata 41
>RF00906;MIR1122;AAAA02019037.1/4499-4338 39946:Oryza sativa Indica
Group
Length = 162
Score = 46.1 bits (23), Expect = 6e-05
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 1 attctaacattttttatattcatattgatattaat 35
||||||||||||| | ||||||||||||||||||
Sbjct: 131 attctaacattttccacattcatattgatattaat 97
>RF00906;MIR1122;AP002539.2/12548-12403 39947:Oryza sativa
Japonica Group
Length = 146
Score = 46.1 bits (23), Expect = 6e-05
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 1 attctaacattttttatattcatattgatattaataaatttagatat 47
|||||| ||||| | | |||||||||||||||||| ||| |||||||
Sbjct: 32 attctagcatttctcacattcatattgatattaatgaatctagatat 78
>RF00906;MIR1122;AP004566.3/127143-127010 39947:Oryza sativa
Japonica Group
Length = 134
Score = 46.1 bits (23), Expect = 6e-05
Identities = 56/66 (84%), Gaps = 2/66 (3%)
Strand = Plus / Minus
Query: 1 attctaacattttttatattcatattgatattaataaatttagatataaatatgaatgtg 60
|||||| ||||||| | |||||||||||| ||||| ||| ||| ||| |||||||||||
Sbjct: 103 attctatcatttttcacattcatattgatgttaatgaatctag--atagatatgaatgtg 46
Query: 61 agaaat 66
|||||
Sbjct: 45 ggaaat 40
>RF00906;MIR1122;AP004132.3/69953-70114 39947:Oryza sativa
Japonica Group
Length = 162
Score = 44.1 bits (22), Expect = 2e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 18 attcatattgatattaataaatttag 43
||||||||| ||||||||||||||||
Sbjct: 49 attcatatttatattaataaatttag 74
>RF00906;MIR1122;AACV01021901.1/3791-3658 39947:Oryza sativa
Japonica Group
Length = 134
Score = 44.1 bits (22), Expect = 2e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 49 aatatgaatgtgagaaataatagaat 74
||||||||||||||||||| ||||||
Sbjct: 57 aatatgaatgtgagaaatactagaat 32
Score = 44.1 bits (22), Expect = 2e-04
Identities = 43/49 (87%), Gaps = 2/49 (4%)
Strand = Plus / Plus
Query: 18 attcatattgatattaataaatttagatataaatatgaatgtgagaaat 66
|||||||||||| ||||| ||| |||| | ||||||||||||||||||
Sbjct: 49 attcatattgatgttaatgaatctagaca--aatatgaatgtgagaaat 95
>RF00906;MIR1122;ABRL01001491.1/12562-12416 65489:Oryza barthii
Length = 147
Score = 44.1 bits (22), Expect = 2e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 49 aatatgaatgtgagaaataatagaat 74
||||||||||||||||||| ||||||
Sbjct: 57 aatatgaatgtgagaaatactagaat 32
>RF00906;MIR1122;AP004761.3/70716-70562 39947:Oryza sativa
Japonica Group
Length = 155
Score = 44.1 bits (22), Expect = 2e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 49 aatatgaatgtgagaaataatagaat 74
|||||||||||| |||||||||||||
Sbjct: 57 aatatgaatgtgggaaataatagaat 32
>RF00906;MIR1122;AACV01023525.1/7783-7916 39947:Oryza sativa
Japonica Group
Length = 134
Score = 44.1 bits (22), Expect = 2e-04
Identities = 46/53 (86%), Gaps = 2/53 (3%)
Strand = Plus / Minus
Query: 22 atattgatattaataaatttagatataaatatgaatgtgagaaataatagaat 74
|||||||| ||||| ||| |||||| | ||||||||||||||||| ||||||
Sbjct: 82 atattgatgttaatgaatctagataga--tatgaatgtgagaaatactagaat 32
>RF00906;MIR1122;AP006533.3/146933-147094 39947:Oryza sativa
Japonica Group
Length = 162
Score = 44.1 bits (22), Expect = 2e-04
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 1 attctaacattttttatattcatattgatattaataaatttagata 46
|||||| ||||| ||||||||||||||| ||||| ||| ||||||
Sbjct: 32 attctagcatttcctatattcatattgatgttaatgaatctagata 77
>RF00906;MIR1122;AP005467.3/75230-75071 39947:Oryza sativa
Japonica Group
Length = 160
Score = 44.1 bits (22), Expect = 2e-04
Identities = 46/54 (85%)
Strand = Plus / Plus
Query: 1 attctaacattttttatattcatattgatattaataaatttagatataaatatg 54
|||||| |||||| || |||||||||||| ||||| ||| |||| ||| |||||
Sbjct: 32 attctagcattttctacattcatattgatgttaatgaatgtagacatatatatg 85
>RF00906;MIR1122;AAAA02032505.1/38201-38060 39946:Oryza sativa
Indica Group
Length = 142
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 46 ataaatatgaatgtgagaaat 66
|||||||||||||||||||||
Sbjct: 83 ataaatatgaatgtgagaaat 103
>RF00906;MIR1122;AAAA02004628.1/54560-54721 39946:Oryza sativa
Indica Group
Length = 162
Score = 42.1 bits (21), Expect = 0.001
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 1 attctaacattttttatattcatat 25
||||||||||||| |||||||||||
Sbjct: 32 attctaacattttctatattcatat 56
>RF00906;MIR1122;AP003770.3/99658-99497 39947:Oryza sativa Japonica
Group
Length = 162
Score = 42.1 bits (21), Expect = 0.001
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 18 attcatattgatattaataaatttagata 46
|||||||||||||||||| ||| ||||||
Sbjct: 114 attcatattgatattaatgaatctagata 86
>RF00906;MIR1122;AY947024.1/140-5 4530:Oryza sativa (rice)
Length = 136
Score = 42.1 bits (21), Expect = 0.001
Identities = 42/49 (85%)
Strand = Plus / Minus
Query: 18 attcatattgatattaataaatttagatataaatatgaatgtgagaaat 66
||||||||| || |||| ||| ||||||| |||||||||||| |||||
Sbjct: 88 attcatattaatgctaatgaatctagatatcaatatgaatgtgggaaat 40
>RF00906;MIR1122;AL731615.4/29247-29098 39947:Oryza sativa Japonica
Group
Length = 150
Score = 42.1 bits (21), Expect = 0.001
Identities = 39/45 (86%)
Strand = Plus / Minus
Query: 1 attctaacattttttatattcatattgatattaataaatttagat 45
|||||| ||||| ||||||||||||||| ||||| ||| |||||
Sbjct: 119 attctagcatttactatattcatattgatgttaatgaatctagat 75
>RF00906;MIR1122;AC084405.6/111503-111664 39947:Oryza sativa
Japonica Group
Length = 162
Score = 42.1 bits (21), Expect = 0.001
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 1 attctaacattttttatattcatattgat 29
|||||||||||| | ||||||||||||||
Sbjct: 131 attctaacatttctcatattcatattgat 103
>RF00906;MIR1122;AP005879.3/69009-69170 39947:Oryza sativa Japonica
Group
Length = 162
Score = 42.1 bits (21), Expect = 0.001
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 1 attctaacattttttatattcatattgat 29
|||||| |||||| |||||||||||||||
Sbjct: 131 attctagcattttctatattcatattgat 103
>RF00906;MIR1122;AAAA02032176.1/1934-1774 39946:Oryza sativa
Indica Group
Length = 161
Score = 42.1 bits (21), Expect = 0.001
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 18 attcatattgatattaataaatttagata 46
|||||||||||||||||| ||| ||||||
Sbjct: 48 attcatattgatattaatgaatctagata 76
>RF00906;MIR1122;AAAA02033830.1/7365-7526 39946:Oryza sativa Indica
Group
Length = 162
Score = 42.1 bits (21), Expect = 0.001
Identities = 45/53 (84%)
Strand = Plus / Minus
Query: 1 attctaacattttttatattcatattgatattaataaatttagatataaatat 53
|||||| |||||| || |||||| ||||||||||| ||| |||| ||| ||||
Sbjct: 131 attctagcattttctaaattcatgttgatattaatgaatctagacatatatat 79
>RF00906;MIR1122;AP008210.1/12565127-12564978 39947:Oryza sativa
Japonica Group
Length = 150
Score = 42.1 bits (21), Expect = 0.001
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 1 attctaacattttttatattcatattgatattaataaatttagat 45
|||||| ||||| ||||||||||||||| ||||| ||| |||||
Sbjct: 32 attctagcatttactatattcatattgatgttaatgaatctagat 76
>RF00906;MIR1122;AACV01018570.1/9896-10057 39947:Oryza sativa
Japonica Group
Length = 162
Score = 42.1 bits (21), Expect = 0.001
Identities = 45/53 (84%)
Strand = Plus / Plus
Query: 1 attctaacattttttatattcatattgatattaataaatttagatataaatat 53
|||||||||||| | |||||||||||||||||| ||| |||| ||| ||||
Sbjct: 32 attctaacatttcccacattcatattgatattaatgaatctagacatatatat 84
>RF00906;MIR1122;AACV01021328.1/31319-31454 39947:Oryza sativa
Japonica Group
Length = 136
Score = 42.1 bits (21), Expect = 0.001
Identities = 42/49 (85%)
Strand = Plus / Plus
Query: 18 attcatattgatattaataaatttagatataaatatgaatgtgagaaat 66
||||||||| || |||| ||| ||||||| |||||||||||| |||||
Sbjct: 49 attcatattaatgctaatgaatctagatatcaatatgaatgtgggaaat 97
>RF00906;MIR1122;AACV01010803.1/31756-31905 39947:Oryza sativa
Japonica Group
Length = 150
Score = 42.1 bits (21), Expect = 0.001
Identities = 39/45 (86%)
Strand = Plus / Minus
Query: 1 attctaacattttttatattcatattgatattaataaatttagat 45
|||||| |||||| || |||||||||||| |||| |||||||||
Sbjct: 119 attctagcattttctacattcatattgatgctaatgaatttagat 75
>RF00906;MIR1122;AACV01021759.1/1958-2106 39947:Oryza sativa
Japonica Group
Length = 149
Score = 42.1 bits (21), Expect = 0.001
Identities = 45/53 (84%)
Strand = Plus / Plus
Query: 1 attctaacattttttatattcatattgatattaataaatttagatataaatat 53
|||||| ||||| | |||||||||||||| ||||| ||| |||| ||| ||||
Sbjct: 32 attctagcatttctcatattcatattgatgttaatgaatctagacatatatat 84
>RF00906;MIR1122;AAAA02008121.1/20552-20439 39946:Oryza sativa
Indica Group
Length = 114
Score = 42.1 bits (21), Expect = 0.001
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 18 attcatattgatattaataaattta 42
|||||||||||| ||||||||||||
Sbjct: 49 attcatattgatgttaataaattta 73
