miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00247;mir-160;ABXC01002436.1/220577-220488 4558:Sorghum bicolor
(sorghum)
Length = 90
Score = 99.6 bits (50), Expect = 5e-21
Identities = 75/82 (91%), Gaps = 1/82 (1%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgccacacatgtagcccaaccca-agaatgtggttgcctgctgtg 59
|||||||||||||||||||||||||||||||||||||| | | ||||||||||||||
Sbjct: 5 gcctggctccctgtatgccacacatgtagcccaacccatatgctaaggttgcctgctgtg 64
Query: 60 ggtggcgtgcaaggtgccaagc 81
|||||||||||||| |||||||
Sbjct: 65 ggtggcgtgcaaggggccaagc 86
>RF00247;mir-160;AAAA02020747.1/14884-14971 39946:Oryza sativa
Indica Group
Length = 88
Score = 81.8 bits (41), Expect = 1e-15
Identities = 72/81 (88%), Gaps = 1/81 (1%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgccacacatgtagcccaacccaagaatgtggttgcctgctgtgg 60
||||||||||||||||||||| |||||||||||| ||| | |||| ||| ||||||||
Sbjct: 5 gcctggctccctgtatgccactcatgtagcccaatccatg-gtgtgtttggatgctgtgg 63
Query: 61 gtggcgtgcaaggtgccaagc 81
||||||||||||| |||||||
Sbjct: 64 gtggcgtgcaaggagccaagc 84
>RF00247;mir-160;EU974767.1/328-419 4577:Zea mays
Length = 92
Score = 73.8 bits (37), Expect = 3e-13
Identities = 74/84 (88%), Gaps = 3/84 (3%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgccacacatgtagc--ccaaccca-agaatgtggttgcctgctg 57
|||||||||||||||||||||||||||||| |||||| | | | ||||||||||||
Sbjct: 5 gcctggctccctgtatgccacacatgtagcgcccaacctagatgctaaggttgcctgctg 64
Query: 58 tgggtggcgtgcaaggtgccaagc 81
|||||||||||||||| |||||||
Sbjct: 65 tgggtggcgtgcaaggggccaagc 88
>RF00247;mir-160;AAAA02005231.1/55127-55040 39946:Oryza sativa
Indica Group
Length = 88
Score = 69.9 bits (35), Expect = 5e-12
Identities = 72/82 (87%), Gaps = 3/82 (3%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgccacacatgtagcccaaccca-agaatgtggttgcctgctgtg 59
||||||||||||||||||||||||||||| |||||||| | | ||||||||| | ||
Sbjct: 5 gcctggctccctgtatgccacacatgtagaccaacccatggtgtctggttgcctac--tg 62
Query: 60 ggtggcgtgcaaggtgccaagc 81
|||||||||||||| |||||||
Sbjct: 63 ggtggcgtgcaaggagccaagc 84
>RF00247;mir-160;EU975926.1/304-390 4577:Zea mays
Length = 87
Score = 65.9 bits (33), Expect = 7e-11
Identities = 71/81 (87%), Gaps = 2/81 (2%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgccacacatgtagcccaacccaagaatgtggttgcctgctgtgg 60
||||||||||||||||||||||||||||| ||||||| | ||| ||| ||||||||
Sbjct: 5 gcctggctccctgtatgccacacatgtag-ccaacccgtg-gcgtgattggatgctgtgg 62
Query: 61 gtggcgtgcaaggtgccaagc 81
||||||||||||| |||||||
Sbjct: 63 gtggcgtgcaaggagccaagc 83
>RF00247;mir-160;FM878703.1/301-387 213592:Musa acuminata subsp.
burmannicoides
Length = 87
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgccacacatg 26
||||||||||||||||||||||||||
Sbjct: 5 gcctggctccctgtatgccacacatg 30
>RF00247;mir-160;CAAP02006197.1/486-575 29760:Vitis vinifera
Length = 90
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgccacac 23
|||||||||||||||||||||||
Sbjct: 5 gcctggctccctgtatgccacac 27
>RF00247;mir-160;ABIM01022486.1/4654-4741 3649:Carica papaya
(papaya)
Length = 88
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgccaca 22
||||||||||||||||||||||
Sbjct: 5 gcctggctccctgtatgccaca 26
>RF00247;mir-160;AC189245.2/87285-87372 51351:Brassica rapa subsp.
pekinensis
Length = 88
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgccaca 22
||||||||||||||||||||||
Sbjct: 5 gcctggctccctgtatgccaca 26
>RF00247;mir-160;AC183492.1/98297-98383 3712:Brassica oleracea
Length = 87
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgccaca 22
||||||||||||||||||||||
Sbjct: 5 gcctggctccctgtatgccaca 26
>RF00247;mir-160;Z97344.2/54320-54406 3702:Arabidopsis thaliana
(thale cress)
Length = 87
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgccaca 22
||||||||||||||||||||||
Sbjct: 5 gcctggctccctgtatgccaca 26
>RF00247;mir-160;AARH01000886.1/36098-36187 3694:Populus
trichocarpa
Length = 90
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgccaca 22
||||||||||||||||||||||
Sbjct: 5 gcctggctccctgtatgccaca 26
>RF00247;mir-160;AY728424.1/1-89 3694:Populus trichocarpa
Length = 89
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgccaca 22
||||||||||||||||||||||
Sbjct: 4 gcctggctccctgtatgccaca 25
>RF00247;mir-160;AASG02024242.1/1209-1298 3988:Ricinus communis
(castor bean)
Length = 90
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgccaca 22
||||||||||||||||||||||
Sbjct: 5 gcctggctccctgtatgccaca 26
