miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00638;MIR159;AACV01000479.1/66279-66476 39947:Oryza sativa
Japonica Group
Length = 198
Score = 343 bits (173), Expect = 5e-94
Identities = 173/173 (100%)
Strand = Plus / Plus
Query: 1 gagcgtccttcagtccactcatgggcggtgctagggtcgaattagctgccgactcattca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13 gagcgtccttcagtccactcatgggcggtgctagggtcgaattagctgccgactcattca 72
Query: 61 cccacatgccaagcaagaaacgcttgagatagcgaagcttagcagatgagtgaatgaagc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73 cccacatgccaagcaagaaacgcttgagatagcgaagcttagcagatgagtgaatgaagc 132
Query: 121 gggaggtaacgttccgatctcgcgccgtctttgcttggactgaagggtgctcc 173
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133 gggaggtaacgttccgatctcgcgccgtctttgcttggactgaagggtgctcc 185
>RF00638;MIR159;EU946960.1/247-441 4577:Zea mays
Length = 195
Score = 174 bits (88), Expect = 3e-43
Identities = 155/174 (89%), Gaps = 5/174 (2%)
Strand = Plus / Plus
Query: 1 gagcgtccttcagtccactcatgggcggtgctagggtcgaattagctgccgactcattca 60
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 13 gagcgtccttcagtccactcaggggcggtgctagggtcgaattagctgccgactcattca 72
Query: 61 cccacatgccaagcaagaaacgcttgagatagcgaagcttagcagatgagtgaatgaagc 120
||||||||||||||| || || || | | ||||| |||||||||||||||||||
Sbjct: 73 cccacatgccaagca--aacggccatggaaacc--agctttgcagatgagtgaatgaagc 128
Query: 121 gggaggt-aacgttccgatctcgcgccgtctttgcttggactgaagggtgctcc 173
||||||| || | | ||||||||| |||||||||||||||||||||||||||||
Sbjct: 129 gggaggtaaaagcttcgatctcgcaccgtctttgcttggactgaagggtgctcc 182
>RF00638;MIR159;ABXC01001681.1/23904-24102 4558:Sorghum bicolor
(sorghum)
Length = 199
Score = 165 bits (83), Expect = 2e-40
Identities = 155/175 (88%), Gaps = 3/175 (1%)
Strand = Plus / Plus
Query: 1 gagcgtccttcagtccactcatgggcggtgctagggtcgaattagctgccgactcattca 60
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 13 gagcgtccttcagtccactcaggggcggtgctagggtcgaattagctgccgactcattca 72
Query: 61 cccacatgccaagcaagaaacgcttgaga-tagcgaagcttagcagatgagtgaatgaag 119
|||||||||||||||| | | || | ||| ||||| ||||||||||||||||||
Sbjct: 73 cccacatgccaagcaaacggccatggaaacgagc-tagctttgcagatgagtgaatgaag 131
Query: 120 cgggaggt-aacgttccgatctcgcgccgtctttgcttggactgaagggtgctcc 173
|||||||| || | | ||||||||| || ||||||||||||||||||||||||||
Sbjct: 132 cgggaggtaaaagcttcgatctcgcaccatctttgcttggactgaagggtgctcc 186
>RF00638;MIR159;AY728409.1/1-184 3694:Populus trichocarpa
Length = 184
Score = 58.0 bits (29), Expect = 4e-08
Identities = 47/53 (88%)
Strand = Plus / Plus
Query: 8 cttcagtccactcatgggcggtgctagggtcgaattagctgccgactcattca 60
|||||||||||||||||| ||| |||| | |||||||||||||||||||||
Sbjct: 19 cttcagtccactcatgggtggtagtaggatttaattagctgccgactcattca 71
>RF00638;MIR159;AASG02019405.1/2563-2341 3988:Ricinus communis
(castor bean)
Length = 223
Score = 58.0 bits (29), Expect = 4e-08
Identities = 47/53 (88%)
Strand = Plus / Plus
Query: 8 cttcagtccactcatgggcggtgctagggtcgaattagctgccgactcattca 60
|||||||||||||||||| || | |||| | |||||||||||||||||||||
Sbjct: 20 cttcagtccactcatgggtggcggtaggatttaattagctgccgactcattca 72
>RF00638;MIR159;AM458581.1/27231-27413 29760:Vitis vinifera
Length = 183
Score = 48.1 bits (24), Expect = 4e-05
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 8 cttcagtccactcatgggcggtgctagggtcgaattagctgccgactc 55
|||||||||||||||||| || |||| | |||||||||||||||||
Sbjct: 20 cttcagtccactcatgggtggcagtaggattgaattagctgccgactc 67
>RF00638;MIR159;AARH01005879.1/28103-28306 3694:Populus
trichocarpa
Length = 204
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 34 gggtcgaattagctgccgactcattca 60
|||| ||||||||||||||||||||||
Sbjct: 48 gggttgaattagctgccgactcattca 74
>RF00638;MIR159;CU570967.5/92301-92498 3880:Medicago truncatula
(barrel medic)
Length = 198
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 147 gtctttgcttggactgaagggtgctcc 173
||||||||||||||||||||| |||||
Sbjct: 159 gtctttgcttggactgaagggagctcc 185
>RF00638;MIR159;CU459032.2/137942-137752 3880:Medicago truncatula
(barrel medic)
Length = 191
Score = 44.1 bits (22), Expect = 6e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 148 tctttgcttggactgaagggtgctcc 173
|||||||||||||||||||| |||||
Sbjct: 153 tctttgcttggactgaagggagctcc 178
>RF00638;MIR159;BABK01011373.1/1521-1344 34305:Lotus japonicus
Length = 178
Score = 44.1 bits (22), Expect = 6e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 40 aattagctgccgactcattcacccacatgc 69
||||||||||||||||||||| ||| ||||
Sbjct: 52 aattagctgccgactcattcatccaaatgc 81
