miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00075;mir-166;AASG02002547.1/1046-1166 3988:Ricinus communis
(castor bean)
Length = 121
Score = 65.9 bits (33), Expect = 2e-10
Identities = 42/45 (93%)
Strand = Plus / Plus
Query: 1 ggggaatgttgtctggctcgaggccactaactagatctttgattt 45
||||||||||||||||||||||| |||||| ||||||| ||||||
Sbjct: 6 ggggaatgttgtctggctcgaggtcactaattagatctatgattt 50
Score = 61.9 bits (31), Expect = 3e-09
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 134 gttagtgacgtcggaccaggcttcattcccc 164
|||||||||||||||||||||||||||||||
Sbjct: 86 gttagtgacgtcggaccaggcttcattcccc 116
>RF00075;mir-166;AM468140.2/16750-16595 29760:Vitis vinifera
Length = 156
Score = 61.9 bits (31), Expect = 3e-09
Identities = 40/43 (93%)
Strand = Plus / Plus
Query: 1 ggggaatgttgtctggctcgaggccactaactagatctttgat 43
||||||||||||||||||||||| ||| |||||||||| ||||
Sbjct: 6 ggggaatgttgtctggctcgaggacaccaactagatctatgat 48
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 142 cgtcggaccaggcttcattcccc 164
|||||||||||||||||||||||
Sbjct: 129 cgtcggaccaggcttcattcccc 151
>RF00075;mir-166;AARH01000156.1/300448-300294 3694:Populus
trichocarpa
Length = 155
Score = 60.0 bits (30), Expect = 1e-08
Identities = 51/58 (87%)
Strand = Plus / Plus
Query: 1 ggggaatgttgtctggctcgaggccactaactagatctttgatttaatctcagttgat 58
||||||||||||||||||||||| |||||| ||||| |||||| |||||| |||||
Sbjct: 6 ggggaatgttgtctggctcgaggtcactaatgggatctatgattttatctcaattgat 63
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 143 gtcggaccaggcttcattcccc 164
||||||||||||||||||||||
Sbjct: 129 gtcggaccaggcttcattcccc 150
>RF00075;mir-166;AY599420.1/1-185 4096:Nicotiana sylvestris (wood
tobacco)
Length = 185
Score = 58.0 bits (29), Expect = 4e-08
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 1 ggggaatgttgtctggctcgaggccactaactagatc 37
||||||||||||||||||||||| ||| |||||||||
Sbjct: 4 ggggaatgttgtctggctcgaggtcaccaactagatc 40
Score = 48.1 bits (24), Expect = 4e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 133 agttagtgacgtcggaccaggcttcattcccc 164
|||||||| ||||||||||||||||||||||
Sbjct: 151 agttagtgttgtcggaccaggcttcattcccc 182
>RF00075;mir-166;ABIM01020443.1/6232-6097 3649:Carica papaya
(papaya)
Length = 136
Score = 56.0 bits (28), Expect = 2e-07
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 133 agttagtgacgtcggaccaggcttcattcccc 164
|||||||| |||||||||||||||||||||||
Sbjct: 100 agttagtgtcgtcggaccaggcttcattcccc 131
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 ggggaatgttgtctggctcgagg 23
|||||||||||||||||||||||
Sbjct: 6 ggggaatgttgtctggctcgagg 28
>RF00075;mir-166;AB016871.1/77005-76861 3702:Arabidopsis thaliana
(thale cress)
Length = 145
Score = 54.0 bits (27), Expect = 6e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 134 gttagtgacgtcggaccaggcttcattcccc 164
|||| ||||||||||||||||||||||||||
Sbjct: 110 gttaatgacgtcggaccaggcttcattcccc 140
>RF00075;mir-166;AC232546.1/61469-61348 51351:Brassica rapa subsp.
pekinensis
Length = 122
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 139 tgacgtcggaccaggcttcattcccc 164
||||||||||||||||||||||||||
Sbjct: 92 tgacgtcggaccaggcttcattcccc 117
>RF00075;mir-166;EU548853.1/145-266 3702:Arabidopsis thaliana (thale
cress)
Length = 122
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 135 ttagtgacgtcggaccaggcttcattcccc 164
|||||| |||||||||||||||||||||||
Sbjct: 88 ttagtgtcgtcggaccaggcttcattcccc 117
>RF00075;mir-166;AP009261.1/72240-72093 4081:Solanum lycopersicum
Length = 148
Score = 50.1 bits (25), Expect = 1e-05
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 1 ggggaatgttgtctggctcgaggccactaactagatc 37
||||||||||||||||||||||| ||| || ||||||
Sbjct: 6 ggggaatgttgtctggctcgaggtcaccaattagatc 42
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 134 gttagtgacgtcggaccaggcttcattcccc 164
||||||| ||||||||||||||||||||||
Sbjct: 113 gttagtgttgtcggaccaggcttcattcccc 143
>RF00075;mir-166;AASG02010073.1/7999-8131 3988:Ricinus communis
(castor bean)
Length = 133
Score = 48.1 bits (24), Expect = 4e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 137 agtgacgtcggaccaggcttcattcccc 164
|||| |||||||||||||||||||||||
Sbjct: 101 agtgtcgtcggaccaggcttcattcccc 128
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 ggggaatgttgtctggctcgagg 23
|||||||||||||||||||||||
Sbjct: 6 ggggaatgttgtctggctcgagg 28
>RF00075;mir-166;CAAP02000145.1/77043-77192 29760:Vitis vinifera
Length = 150
Score = 48.1 bits (24), Expect = 4e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 1 ggggaatgttgtctggctcgaggccact 28
||||||||||||||||||||||| ||||
Sbjct: 6 ggggaatgttgtctggctcgaggacact 33
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 142 cgtcggaccaggcttcattcccc 164
|||||||||||||||||||||||
Sbjct: 123 cgtcggaccaggcttcattcccc 145
>RF00075;mir-166;AARH01006070.1/215270-215403 3694:Populus
trichocarpa
Length = 134
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 ggggaatgttgtctggctcgagg 23
|||||||||||||||||||||||
Sbjct: 6 ggggaatgttgtctggctcgagg 28
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 143 gtcggaccaggcttcattcccc 164
||||||||||||||||||||||
Sbjct: 108 gtcggaccaggcttcattcccc 129
>RF00075;mir-166;AARH01001165.1/83261-83385 3694:Populus
trichocarpa
Length = 125
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 ggggaatgttgtctggctcgagg 23
|||||||||||||||||||||||
Sbjct: 6 ggggaatgttgtctggctcgagg 28
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 142 cgtcggaccaggcttcattcccc 164
|||||||||||||||||||||||
Sbjct: 98 cgtcggaccaggcttcattcccc 120
>RF00075;mir-166;AC144592.26/52711-52605 3880:Medicago truncatula
(barrel medic)
Length = 107
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 ggggaatgttgtctggctcgagg 23
|||||||||||||||||||||||
Sbjct: 6 ggggaatgttgtctggctcgagg 28
>RF00075;mir-166;BABK01006649.1/1239-1127 34305:Lotus japonicus
Length = 113
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 ggggaatgttgtctggctcgagg 23
|||||||||||||||||||||||
Sbjct: 6 ggggaatgttgtctggctcgagg 28
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 143 gtcggaccaggcttcattcccc 164
||||||||||||||||||||||
Sbjct: 87 gtcggaccaggcttcattcccc 108
>RF00075;mir-166;CAAP02000526.1/74430-74281 29760:Vitis vinifera
Length = 150
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 1 ggggaatgttgtctggctcgaggccac 27
||||| |||||||||||||||||||||
Sbjct: 6 ggggattgttgtctggctcgaggccac 32
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 134 gttagtgacgtcggaccaggcttcattcccc 164
||||||| | |||||||||||||||||||||
Sbjct: 115 gttagtgccctcggaccaggcttcattcccc 145
>RF00075;mir-166;FJ010939.2/353-450 52838:Musa balbisiana
Length = 98
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 ggggaatgttgtctggctcgagg 23
|||||||||||||||||||||||
Sbjct: 6 ggggaatgttgtctggctcgagg 28
>RF00075;mir-166;EU956093.1/113-209 4577:Zea mays
Length = 97
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 ggggaatgttgtctggctcgagg 23
|||||||||||||||||||||||
Sbjct: 6 ggggaatgttgtctggctcgagg 28
>RF00075;mir-166;ABXC01002952.1/108749-108653 4558:Sorghum bicolor
(sorghum)
Length = 97
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 ggggaatgttgtctggctcgagg 23
|||||||||||||||||||||||
Sbjct: 6 ggggaatgttgtctggctcgagg 28
>RF00075;mir-166;AP008208.1/26148565-26148667 39947:Oryza sativa
Japonica Group
Length = 103
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 ggggaatgttgtctggctcgagg 23
|||||||||||||||||||||||
Sbjct: 6 ggggaatgttgtctggctcgagg 28
>RF00075;mir-166;ABIM01012777.1/4514-4390 3649:Carica papaya
(papaya)
Length = 125
Score = 44.1 bits (22), Expect = 6e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 135 ttagtgacgtcggaccaggcttcattcccc 164
||||||| |||||||||||||||||||||
Sbjct: 91 ttagtgatctcggaccaggcttcattcccc 120
>RF00075;mir-166;AC189591.2/50508-50400 51351:Brassica rapa subsp.
pekinensis
Length = 109
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 143 gtcggaccaggcttcattcccc 164
||||||||||||||||||||||
Sbjct: 83 gtcggaccaggcttcattcccc 104
>RF00075;mir-166;EU548911.1/166-263 3702:Arabidopsis thaliana (thale
cress)
Length = 98
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 143 gtcggaccaggcttcattcccc 164
||||||||||||||||||||||
Sbjct: 72 gtcggaccaggcttcattcccc 93
>RF00075;mir-166;EU548905.1/187-287 3702:Arabidopsis thaliana (thale
cress)
Length = 101
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 143 gtcggaccaggcttcattcccc 164
||||||||||||||||||||||
Sbjct: 75 gtcggaccaggcttcattcccc 96
>RF00075;mir-166;AAAA02025700.1/14722-14582 39946:Oryza sativa
Indica Group
Length = 141
Score = 44.1 bits (22), Expect = 6e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 138 gtgacgtcggaccaggcttcattccc 163
||||| ||||||||||||||||||||
Sbjct: 110 gtgacctcggaccaggcttcattccc 135
>RF00075;mir-166;AACV01018689.1/7378-7519 39947:Oryza sativa
Japonica Group
Length = 142
Score = 44.1 bits (22), Expect = 6e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 138 gtgacgtcggaccaggcttcattccc 163
||||| ||||||||||||||||||||
Sbjct: 111 gtgacctcggaccaggcttcattccc 136
