miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00638;MIR159;CR962124.2/16450-16257 3880:Medicago truncatula
(barrel medic)
Length = 194
Score = 165 bits (83), Expect = 2e-40
Identities = 151/171 (88%), Gaps = 2/171 (1%)
Strand = Plus / Plus
Query: 4 gagctttcttcagtccactcataggtggcagtaagatt-caattagctgccgactcattc 62
|||||||||| ||||||||||| |||| || ||||||| ||||||||||| |||||||||
Sbjct: 13 gagctttctttagtccactcatgggtgacaataagatttcaattagctgctgactcattc 72
Query: 63 atccaaatgctgagtagtg-atactcttaaagatactcatcaaatgagtgaatgatgcgg 121
||||||||| |||||| ||| | | ||||||||||||||||||||||||||||
Sbjct: 73 atccaaatgttgagtaaaatatatagaaacatatactcatcaaatgagtgaatgatgcgg 132
Query: 122 gagacaaattgattcttaagtttcctgtacttggactgaagggagctccct 172
|||||||||||| ||||||||||||| ||||||||||||||||||||||||
Sbjct: 133 gagacaaattgaatcttaagtttcctatacttggactgaagggagctccct 183
>RF00638;MIR159;AY728409.1/1-184 3694:Populus trichocarpa
Length = 184
Score = 141 bits (71), Expect = 4e-33
Identities = 147/170 (86%), Gaps = 3/170 (1%)
Strand = Plus / Plus
Query: 4 gagctttcttcagtccactcataggtggcagtaagattcaattagctgccgactcattca 63
|||||||||||||||||||||| ||||| |||| |||| |||||||||||||||||||||
Sbjct: 12 gagctttcttcagtccactcatgggtggtagtaggatttaattagctgccgactcattca 71
Query: 64 tccaaatgctgagtagtgatactcttaaagat-actcatcaaatgagtgaatgatgcggg 122
||||||| |||||| | | | |||| || || ||||||||||||||||||||
Sbjct: 72 tccaaatactgagt--taaaggacaaggagattacccagtaaatgagtgaatgatgcggg 129
Query: 123 agacaaattgattcttaagtttcctgtacttggactgaagggagctccct 172
||||||||||| || |||| ||||||||||||||||||||||||||||||
Sbjct: 130 agacaaattgaatcctaagcttcctgtacttggactgaagggagctccct 179
>RF00638;MIR159;AASG02019405.1/2563-2341 3988:Ricinus communis
(castor bean)
Length = 223
Score = 123 bits (62), Expect = 8e-28
Identities = 68/70 (97%)
Strand = Plus / Plus
Query: 103 aaatgagtgaatgatgcgggagacaaattgattcttaagtttcctgtacttggactgaag 162
||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||
Sbjct: 143 aaatgagtgaatgatgcgggagacaaattgaatcttaagcttcctgtacttggactgaag 202
Query: 163 ggagctccct 172
||||||||||
Sbjct: 203 ggagctccct 212
Score = 107 bits (54), Expect = 5e-23
Identities = 69/74 (93%)
Strand = Plus / Plus
Query: 4 gagctttcttcagtccactcataggtggcagtaagattcaattagctgccgactcattca 63
|||||||||||||||||||||| |||||| ||| |||| |||||||||||||||||||||
Sbjct: 13 gagctttcttcagtccactcatgggtggcggtaggatttaattagctgccgactcattca 72
Query: 64 tccaaatgctgagt 77
||||||| ||||||
Sbjct: 73 tccaaatactgagt 86
>RF00638;MIR159;BABK01011373.1/1521-1344 34305:Lotus japonicus
Length = 178
Score = 113 bits (57), Expect = 8e-25
Identities = 140/169 (82%), Gaps = 14/169 (8%)
Strand = Plus / Plus
Query: 4 gagctttcttcagtccactcataggtggcagtaagattcaattagctgccgactcattca 63
||||||||||||||||| |||| ||||| ||||| |||||||||||||||||||||||
Sbjct: 13 gagctttcttcagtccattcatgggtggttataagaatcaattagctgccgactcattca 72
Query: 64 tccaaatgctgagtagtgatactcttaaagatactcatcaaatgagtgaatgatgcggga 123
|||||||||||| | ||| || ||| |||||||||||||||||||||
Sbjct: 73 tccaaatgctgaat-gtg-------------tattcagtaaatgagtgaatgatgcggga 118
Query: 124 gacaaattgattcttaagtttcctgtacttggactgaagggagctccct 172
||||||||| ||||||| ||||||| |||||||||||||||||||||
Sbjct: 119 gacaaattgtatcttaagcttcctgttattggactgaagggagctccct 167
>RF00638;MIR159;AM458581.1/27231-27413 29760:Vitis vinifera
Length = 183
Score = 113 bits (57), Expect = 8e-25
Identities = 143/171 (83%), Gaps = 13/171 (7%)
Strand = Plus / Plus
Query: 4 gagctttcttcagtccactcataggtggcagtaagattcaattagctgccgact-cattc 62
|||||||||||||||||||||| |||||||||| |||| ||||||||||||||| |||||
Sbjct: 13 gagctttcttcagtccactcatgggtggcagtaggattgaattagctgccgactccattc 72
Query: 63 atccaaatgctgagtagtgatactcttaaaga-tactcatcaaatgagtgaatgatgcgg 121
|||||||| ||| | |||| || ||| || |||||| ||||||||||||
Sbjct: 73 atccaaatactg-----------tgttaaggactacccagtaaatgattgaatgatgcgg 121
Query: 122 gagacaaattgattcttaagtttcctgtacttggactgaagggagctccct 172
||||||||||| ||||||| | ||||| ||||||||||||||||||||||
Sbjct: 122 gagacaaattggatcttaagctccctgtgcttggactgaagggagctccct 172
>RF00638;MIR159;EF091572.1/4-172 4081:Solanum lycopersicum
Length = 169
Score = 77.8 bits (39), Expect = 4e-14
Identities = 67/75 (89%), Gaps = 1/75 (1%)
Strand = Plus / Plus
Query: 97 ctcatcaaatgagtgaatgatgcgggag-acaaattgattcttaagtttcctgtacttgg 155
|||| ||| ||||||||||| ||||||| |||| |||| |||| || |||||||||||||
Sbjct: 95 ctcagcaactgagtgaatgaagcgggagtacaagttgagtcttgagcttcctgtacttgg 154
Query: 156 actgaagggagctcc 170
|||||||||||||||
Sbjct: 155 actgaagggagctcc 169
>RF00638;MIR159;EU549299.1/339-148 3702:Arabidopsis thaliana (thale
cress)
Length = 192
Score = 67.9 bits (34), Expect = 4e-11
Identities = 61/70 (87%)
Strand = Plus / Plus
Query: 103 aaatgagtgaatgatgcgggagacaaattgattcttaagtttcctgtacttggactgaag 162
|||||| ||||||||||| |||||||||||| |||| | || || | ||||||||||||
Sbjct: 112 aaatgaatgaatgatgcgagagacaaattgagtcttcacttctctatgcttggactgaag 171
Query: 163 ggagctccct 172
||||||||||
Sbjct: 172 ggagctccct 181
>RF00638;MIR159;AARH01001833.1/17947-18134 3694:Populus trichocarpa
Length = 188
Score = 67.9 bits (34), Expect = 4e-11
Identities = 61/70 (87%)
Strand = Plus / Plus
Query: 103 aaatgagtgaatgatgcgggagacaaattgattcttaagtttcctgtacttggactgaag 162
|||||| ||| |||||||||||||||||| | |||||| ||||| | |||||||||||
Sbjct: 108 aaatgaatgagtgatgcgggagacaaattaaatcttaaacttcctatcattggactgaag 167
Query: 163 ggagctccct 172
||||||||||
Sbjct: 168 ggagctccct 177
>RF00638;MIR159;AY922331.1/1646-1837 3702:Arabidopsis thaliana
(thale cress)
Length = 192
Score = 58.0 bits (29), Expect = 4e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 38 gattcaattagctgccgactcattcatccaaat 70
||||||||||||| |||||||||||||||||||
Sbjct: 47 gattcaattagcttccgactcattcatccaaat 79
>RF00638;MIR159;AY775965.1/635-826 13288:Thlaspi arvense
Length = 192
Score = 50.1 bits (25), Expect = 1e-05
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 42 caattagctgccgactcattcatccaaat 70
||||||||| |||||||||||||||||||
Sbjct: 51 caattagcttccgactcattcatccaaat 79
>RF00638;MIR159;AY775959.1/657-850 81985:Capsella rubella
Length = 194
Score = 50.1 bits (25), Expect = 1e-05
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 42 caattagctgccgactcattcatccaaat 70
||||||||| |||||||||||||||||||
Sbjct: 51 caattagcttccgactcattcatccaaat 79
Score = 44.1 bits (22), Expect = 6e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 103 aaatgagtgaatgatgcgggagacaaattg 132
|||||| |||||||||||| ||||||||||
Sbjct: 114 aaatgaatgaatgatgcggtagacaaattg 143
>RF00638;MIR159;AY775963.1/615-806 50459:Barbarea vulgaris (winter
cress)
Length = 192
Score = 50.1 bits (25), Expect = 1e-05
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 42 caattagctgccgactcattcatccaaat 70
||||||||| |||||||||||||||||||
Sbjct: 51 caattagcttccgactcattcatccaaat 79
Score = 46.1 bits (23), Expect = 2e-04
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 94 atactcatcaaatgagtgaatgatgcgggagacaaattg 132
|||||| | |||||| |||||||||||| ||||||||||
Sbjct: 103 atactcgttaaatgaatgaatgatgcggtagacaaattg 141
>RF00638;MIR159;AY775975.1/842-1033 3713:Brassica oleracea var.
acephala (kale)
Length = 192
Score = 48.1 bits (24), Expect = 4e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 42 caattagctgccgactcattcatccaaatgctgagt 77
||||||||| |||| |||||||||||||| ||||||
Sbjct: 51 caattagcttccgaatcattcatccaaatactgagt 86
>RF00638;MIR159;ABIM01001344.1/11584-11387 3649:Carica papaya
(papaya)
Length = 198
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 146 ctgtacttggactgaagggagctccct 172
|||| ||||||||||||||||||||||
Sbjct: 161 ctgtgcttggactgaagggagctccct 187
>RF00638;MIR159;AY884227.1/8-182 3694:Populus trichocarpa
Length = 175
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 146 ctgtacttggactgaagggagctccct 172
|||| ||||||||||||||||||||||
Sbjct: 147 ctgtgcttggactgaagggagctccct 173
Score = 44.1 bits (22), Expect = 6e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 44 attagctgccgactcattcatccaaa 69
||||||||||||||||||||| ||||
Sbjct: 42 attagctgccgactcattcattcaaa 67
>RF00638;MIR159;AASG02011104.1/6116-5917 3988:Ricinus communis
(castor bean)
Length = 200
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 146 ctgtacttggactgaagggagctccct 172
|||| ||||||||||||||||||||||
Sbjct: 163 ctgtgcttggactgaagggagctccct 189
>RF00638;MIR159;AM471650.2/47253-47061 29760:Vitis vinifera
Length = 193
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 146 ctgtacttggactgaagggagctccct 172
|||| ||||||||||||||||||||||
Sbjct: 156 ctgtgcttggactgaagggagctccct 182
Score = 44.1 bits (22), Expect = 6e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 44 attagctgccgactcattcatccaaa 69
||||||||||||||||||||| ||||
Sbjct: 54 attagctgccgactcattcattcaaa 79
>RF00638;MIR159;ABIM01013664.1/2939-3169 3649:Carica papaya (papaya)
Length = 231
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 151 cttggactgaagggagctccct 172
||||||||||||||||||||||
Sbjct: 199 cttggactgaagggagctccct 220
>RF00638;MIR159;AARH01005879.1/28103-28306 3694:Populus
trichocarpa
Length = 204
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 43 aattagctgccgactcattcat 64
||||||||||||||||||||||
Sbjct: 54 aattagctgccgactcattcat 75
>RF00638;MIR159;AASG02014601.1/2536-2726 3988:Ricinus communis
(castor bean)
Length = 191
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 151 cttggactgaagggagctccct 172
||||||||||||||||||||||
Sbjct: 159 cttggactgaagggagctccct 180
>RF00638;MIR159;CU459032.2/137942-137752 3880:Medicago truncatula
(barrel medic)
Length = 191
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 151 cttggactgaagggagctccct 172
||||||||||||||||||||||
Sbjct: 159 cttggactgaagggagctccct 180
>RF00638;MIR159;CU570967.5/92301-92498 3880:Medicago truncatula
(barrel medic)
Length = 198
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 151 cttggactgaagggagctccct 172
||||||||||||||||||||||
Sbjct: 166 cttggactgaagggagctccct 187
>RF00638;MIR159;CAAP02000776.1/6894-7088 29760:Vitis vinifera
Length = 195
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 151 cttggactgaagggagctccct 172
||||||||||||||||||||||
Sbjct: 163 cttggactgaagggagctccct 184
>RF00638;MIR159;EU946960.1/247-441 4577:Zea mays
Length = 195
Score = 44.1 bits (22), Expect = 6e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 43 aattagctgccgactcattcatccaaatgc 72
||||||||||||||||||||| ||| ||||
Sbjct: 52 aattagctgccgactcattcacccacatgc 81
>RF00638;MIR159;ABXC01001681.1/23904-24102 4558:Sorghum bicolor
(sorghum)
Length = 199
Score = 44.1 bits (22), Expect = 6e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 43 aattagctgccgactcattcatccaaatgc 72
||||||||||||||||||||| ||| ||||
Sbjct: 52 aattagctgccgactcattcacccacatgc 81
>RF00638;MIR159;AACV01000479.1/66279-66476 39947:Oryza sativa
Japonica Group
Length = 198
Score = 44.1 bits (22), Expect = 6e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 43 aattagctgccgactcattcatccaaatgc 72
||||||||||||||||||||| ||| ||||
Sbjct: 52 aattagctgccgactcattcacccacatgc 81
