miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00742;MIR162_2;AASG02018381.1/677-582 3988:Ricinus communis
(castor bean)
Length = 96
Score = 83.8 bits (42), Expect = 4e-16
Identities = 83/94 (88%), Gaps = 2/94 (2%)
Strand = Plus / Plus
Query: 1 ctggaggcagcggttcatcgatcactttgtgcaa-attttgttgtgaaaaataacacaaa 59
||||||||||||||||||||||| ||| || || |||||||||||||| | || | |||
Sbjct: 3 ctggaggcagcggttcatcgatctcttcctggaagattttgttgtgaaacaaaa-ataaa 61
Query: 60 atacatgaatcgatcgataaacctctgcatccag 93
| |||||||||||||||||||||||||||||||
Sbjct: 62 acgcatgaatcgatcgataaacctctgcatccag 95
>RF00742;MIR162_2;ABIM01004242.1/4343-4433 3649:Carica papaya
(papaya)
Length = 91
Score = 71.9 bits (36), Expect = 1e-12
Identities = 80/93 (86%), Gaps = 5/93 (5%)
Strand = Plus / Plus
Query: 1 ctggaggcagcggttcatcgatcactttgtgcaaattttgttgtgaaaaataacacaaaa 60
||||||||||||||||||||||| ||| || ||||| || ||||||||| ||| ||
Sbjct: 3 ctggaggcagcggttcatcgatctcttcctgggaatttggt-gtgaaaaatcacagaa-- 59
Query: 61 tacatgaatcgatcgataaacctctgcatccag 93
|||||||||||||||||||||||||||||||
Sbjct: 60 --catgaatcgatcgataaacctctgcatccag 90
>RF00742;MIR162_2;AB006708.1/30672-30582 3702:Arabidopsis thaliana
(thale cress)
Length = 91
Score = 56.0 bits (28), Expect = 8e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 66 gaatcgatcgataaacctctgcatccag 93
||||||||||||||||||||||||||||
Sbjct: 63 gaatcgatcgataaacctctgcatccag 90
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 ctggaggcagcggttcatcgatca 24
||||||||||||||||||||||||
Sbjct: 3 ctggaggcagcggttcatcgatca 26
>RF00742;MIR162_2;AARH01005287.1/78295-78385 3694:Populus
trichocarpa
Length = 91
Score = 56.0 bits (28), Expect = 8e-08
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 62 acatgaatcgatcgataaacctctgcatccag 93
||||||| ||||||||||||||||||||||||
Sbjct: 59 acatgaaccgatcgataaacctctgcatccag 90
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 ctggaggcagcggttcatcgatc 23
|||||||||||||||||||||||
Sbjct: 3 ctggaggcagcggttcatcgatc 25
>RF00742;MIR162_2;AC162031.12/99168-99079 3880:Medicago truncatula
(barrel medic)
Length = 90
Score = 56.0 bits (28), Expect = 8e-08
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 62 acatgaatcgatcgataaacctctgcatccag 93
|||||||||| |||||||||||||||||||||
Sbjct: 58 acatgaatcggtcgataaacctctgcatccag 89
>RF00742;MIR162_2;ABXC01002838.1/886-1017 4558:Sorghum bicolor
(sorghum)
Length = 132
Score = 56.0 bits (28), Expect = 8e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 66 gaatcgatcgataaacctctgcatccag 93
||||||||||||||||||||||||||||
Sbjct: 104 gaatcgatcgataaacctctgcatccag 131
>RF00742;MIR162_2;AK073954.1/290-447 39947:Oryza sativa Japonica
Group
Length = 158
Score = 56.0 bits (28), Expect = 8e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 66 gaatcgatcgataaacctctgcatccag 93
||||||||||||||||||||||||||||
Sbjct: 130 gaatcgatcgataaacctctgcatccag 157
>RF00742;MIR162_2;AAAA02006876.1/21311-21153 39946:Oryza sativa
Indica Group
Length = 159
Score = 56.0 bits (28), Expect = 8e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 66 gaatcgatcgataaacctctgcatccag 93
||||||||||||||||||||||||||||
Sbjct: 131 gaatcgatcgataaacctctgcatccag 158
>RF00742;MIR162_2;EU548677.1/192-105 3702:Arabidopsis thaliana
(thale cress)
Length = 88
Score = 54.0 bits (27), Expect = 3e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 63 catgaatcgatcgataaacctctgcatccag 93
||||||| |||||||||||||||||||||||
Sbjct: 57 catgaatagatcgataaacctctgcatccag 87
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 ctggaggcagcggttcatcgatc 23
|||||||||||||||||||||||
Sbjct: 3 ctggaggcagcggttcatcgatc 25
>RF00742;MIR162_2;AC189332.2/56556-56647 51351:Brassica rapa
subsp. pekinensis
Length = 92
Score = 48.1 bits (24), Expect = 2e-05
Identities = 76/93 (81%), Gaps = 4/93 (4%)
Strand = Plus / Plus
Query: 1 ctggaggcagcggttcatcgatcactttgtgcaaattttgttgtgaaaaataacacaaaa 60
||||||||||||||| ||||||| ||||||| |||||| ||||||| || | |||
Sbjct: 3 ctggaggcagcggttgatcgatctctttgtgggaatttt----tgaaaaacaaaattaaa 58
Query: 61 tacatgaatcgatcgataaacctctgcatccag 93
|||||| ||||||||||||| |||||||||
Sbjct: 59 agcatgaacagatcgataaacctgtgcatccag 91
>RF00742;MIR162_2;AY728420.1/1-91 3694:Populus trichocarpa
Length = 91
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 70 cgatcgataaacctctgcatccag 93
||||||||||||||||||||||||
Sbjct: 67 cgatcgataaacctctgcatccag 90
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 ctggaggcagcggttcatcgatc 23
|||||||||||||||||||||||
Sbjct: 3 ctggaggcagcggttcatcgatc 25
>RF00742;MIR162_2;AM451502.1/2540-2627 29760:Vitis vinifera
Length = 88
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 66 gaatcgatcgataaacctctgcatccag 93
|||||| |||||||||||||||||||||
Sbjct: 60 gaatcggtcgataaacctctgcatccag 87
>RF00742;MIR162_2;BT061256.1/316-448 4577:Zea mays
Length = 133
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 66 gaatcgatcgataaacctctgcatccag 93
|||||| |||||||||||||||||||||
Sbjct: 105 gaatcggtcgataaacctctgcatccag 132
>RF00742;MIR162_2;AACV01010015.1/69608-69724 39947:Oryza sativa
Japonica Group
Length = 117
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 66 gaatcgatcgataaacctctgcatccag 93
|||||||||||||| |||||||||||||
Sbjct: 89 gaatcgatcgataagcctctgcatccag 116
