miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00640;MIR167_1;AARH01001059.1/160212-160110 3694:Populus
trichocarpa
Length = 103
Score = 73.8 bits (37), Expect = 3e-13
Identities = 71/82 (86%), Gaps = 4/82 (4%)
Strand = Plus / Plus
Query: 1 tgaagctgccagcatgatctagctttggttagagagagcagaagagtgctaaccctgact 60
||||||||||||||||||||| ||||||||||||| || | || |||||||| ||
Sbjct: 14 tgaagctgccagcatgatctatctttggttagagaaag----aaaggactaaccctagct 69
Query: 61 aggtcatgctgtgacagcctca 82
||||||||||||||||||||||
Sbjct: 70 aggtcatgctgtgacagcctca 91
>RF00640;MIR167_1;AP006429.1/12775-12654 34305:Lotus japonicus
Length = 122
Score = 71.9 bits (36), Expect = 1e-12
Identities = 48/52 (92%)
Strand = Plus / Plus
Query: 1 tgaagctgccagcatgatctagctttggttagagagagcagaagagtgctaa 52
||||||||||||||||||||||||||||||||||| || | ||||||||||
Sbjct: 14 tgaagctgccagcatgatctagctttggttagagaaagaggtagagtgctaa 65
Score = 63.9 bits (32), Expect = 3e-10
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 47 tgctaaccctgactaggtcatgctgtgacagcctca 82
||||||||||||||||||||||||| ||||||||||
Sbjct: 75 tgctaaccctgactaggtcatgctgcgacagcctca 110
>RF00640;MIR167_1;AASG02000565.1/57130-57272 3988:Ricinus communis
(castor bean)
Length = 143
Score = 65.9 bits (33), Expect = 7e-11
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 1 tgaagctgccagcatgatctagctttggttagagaga 37
|||||||||||||||||||||||||||||||| ||||
Sbjct: 14 tgaagctgccagcatgatctagctttggttagtgaga 50
Score = 52.0 bits (26), Expect = 1e-06
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 45 agtgctaaccctgactaggtcatgctgtgacagcctca 82
|||||||||||| |||||||||||| |||||||||||
Sbjct: 94 agtgctaaccctagctaggtcatgctctgacagcctca 131
>RF00640;MIR167_1;AARH01033933.1/298-187 3694:Populus trichocarpa
Length = 112
Score = 61.9 bits (31), Expect = 1e-09
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 1 tgaagctgccagcatgatctagctttggttagaga 35
||||||||||||||||||||| |||||||||||||
Sbjct: 14 tgaagctgccagcatgatctatctttggttagaga 48
>RF00640;MIR167_1;ABXC01005647.1/66563-66713 4558:Sorghum bicolor
(sorghum)
Length = 151
Score = 60.0 bits (30), Expect = 4e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 1 tgaagctgccagcatgatctagctttggtt 30
||||||||||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctagctttggtt 43
>RF00640;MIR167_1;CAAP02000379.1/19428-19545 29760:Vitis vinifera
Length = 118
Score = 56.0 bits (28), Expect = 7e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 1 tgaagctgccagcatgatctagctttgg 28
||||||||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctagctttgg 41
>RF00640;MIR167_1;EU548982.1/151-266 3702:Arabidopsis thaliana
(thale cress)
Length = 116
Score = 54.0 bits (27), Expect = 3e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 1 tgaagctgccagcatgatctagctttggtta 31
||||||||||||||||||||| |||||||||
Sbjct: 14 tgaagctgccagcatgatctatctttggtta 44
>RF00640;MIR167_1;AC174291.12/5719-6052 3880:Medicago truncatula
(barrel medic)
Length = 334
Score = 54.0 bits (27), Expect = 3e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 1 tgaagctgccagcatgatctagctttggtta 31
|||||||||||||||||||||| ||||||||
Sbjct: 14 tgaagctgccagcatgatctaggtttggtta 44
Score = 50.1 bits (25), Expect = 4e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 50 taaccctgactaggtcatgctgtgacagcctca 82
|||||||||||||||||||||||| |||||||
Sbjct: 290 taaccctgactaggtcatgctgtgctagcctca 322
>RF00640;MIR167_1;ABIM01012099.1/4885-4992 3649:Carica papaya
(papaya)
Length = 108
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 tgaagctgccagcatgatctagct 24
||||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctagct 37
>RF00640;MIR167_1;EU947925.1/384-504 4577:Zea mays
Length = 121
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 tgaagctgccagcatgatctagct 24
||||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctagct 37
>RF00640;MIR167_1;ABXC01000050.1/9782-9902 4558:Sorghum bicolor
(sorghum)
Length = 121
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 tgaagctgccagcatgatctagct 24
||||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctagct 37
>RF00640;MIR167_1;AL928781.4/79791-79930 4530:Oryza sativa (rice)
Length = 140
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 tgaagctgccagcatgatctagct 24
||||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctagct 37
>RF00640;MIR167_1;AC092076.7/52843-52692 39947:Oryza sativa
Japonica Group
Length = 152
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 tgaagctgccagcatgatctagct 24
||||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctagct 37
>RF00640;MIR167_1;AC189327.2/282-159 51351:Brassica rapa subsp.
pekinensis
Length = 124
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 tgaagctgccagcatgatctag 22
||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctag 35
