miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00643;MIR171_1;AC189627.2/36180-36072 51351:Brassica rapa subsp.
pekinensis
Length = 109
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 tgattgagccgcgccaatatctca 24
||||||||||||||||||||||||
Sbjct: 77 tgattgagccgcgccaatatctca 100
>RF00643;MIR171_1;EU549097.1/220-333 3702:Arabidopsis thaliana
(thale cress)
Length = 114
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 tgattgagccgcgccaatatctca 24
||||||||||||||||||||||||
Sbjct: 82 tgattgagccgcgccaatatctca 105
>RF00643;MIR171_1;AP003573.3/25796-25895 39947:Oryza sativa
Japonica Group
Length = 100
Score = 46.1 bits (23), Expect = 4e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 tgattgagccgcgccaatatctc 23
|||||||||||||||||||||||
Sbjct: 68 tgattgagccgcgccaatatctc 90
>RF00643;MIR171_1;ABIM01001615.1/3078-3177 3649:Carica papaya
(papaya)
Length = 100
Score = 42.1 bits (21), Expect = 6e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 tgattgagccgcgccaatatc 21
|||||||||||||||||||||
Sbjct: 68 tgattgagccgcgccaatatc 88
>RF00643;MIR171_1;AC150705.17/109871-109755 3880:Medicago truncatula
(barrel medic)
Length = 117
Score = 42.1 bits (21), Expect = 6e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 1 tgattgagccgcgccaatatctcac 25
||||||||||| |||||||||||||
Sbjct: 85 tgattgagccgtgccaatatctcac 109
>RF00643;MIR171_1;BABK01005968.1/2486-2599 34305:Lotus japonicus
Length = 114
Score = 42.1 bits (21), Expect = 6e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 1 tgattgagccgcgccaatatctcac 25
||||||||||| |||||||||||||
Sbjct: 82 tgattgagccgtgccaatatctcac 106
>RF00643;MIR171_1;BABK01108397.1/266-409 34305:Lotus japonicus
Length = 144
Score = 42.1 bits (21), Expect = 6e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 1 tgattgagccgcgccaatatctcac 25
||||||||||| |||||||||||||
Sbjct: 112 tgattgagccgtgccaatatctcac 136
>RF00643;MIR171_1;AP010316.1/5761-5862 34305:Lotus japonicus
Length = 102
Score = 42.1 bits (21), Expect = 6e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 tgattgagccgcgccaatatc 21
|||||||||||||||||||||
Sbjct: 70 tgattgagccgcgccaatatc 90
>RF00643;MIR171_1;AC212766.1/32177-32277 4081:Solanum lycopersicum
Length = 101
Score = 42.1 bits (21), Expect = 6e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 tgattgagccgcgccaatatc 21
|||||||||||||||||||||
Sbjct: 69 tgattgagccgcgccaatatc 89
>RF00643;MIR171_1;CAAP02000222.1/31256-31356 29760:Vitis vinifera
Length = 101
Score = 42.1 bits (21), Expect = 6e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 tgattgagccgcgccaatatc 21
|||||||||||||||||||||
Sbjct: 69 tgattgagccgcgccaatatc 89
>RF00643;MIR171_1;ABXC01002454.1/83659-83541 4558:Sorghum bicolor
(sorghum)
Length = 119
Score = 42.1 bits (21), Expect = 6e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 tgattgagccgcgccaatatc 21
|||||||||||||||||||||
Sbjct: 87 tgattgagccgcgccaatatc 107
