miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00643;MIR171_1;AC189627.2/36180-36072 51351:Brassica rapa subsp.
pekinensis
Length = 109
Score = 44.1 bits (22), Expect = 8e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 194 ctgattgagccgcgccaatatc 215
||||||||||||||||||||||
Sbjct: 76 ctgattgagccgcgccaatatc 97
>RF00643;MIR171_1;EU549097.1/220-333 3702:Arabidopsis thaliana
(thale cress)
Length = 114
Score = 44.1 bits (22), Expect = 8e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 194 ctgattgagccgcgccaatatc 215
||||||||||||||||||||||
Sbjct: 81 ctgattgagccgcgccaatatc 102
>RF00643;MIR171_1;AP010316.1/5761-5862 34305:Lotus japonicus
Length = 102
Score = 44.1 bits (22), Expect = 8e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 194 ctgattgagccgcgccaatatc 215
||||||||||||||||||||||
Sbjct: 69 ctgattgagccgcgccaatatc 90
>RF00643;MIR171_1;CAAP02000222.1/31256-31356 29760:Vitis vinifera
Length = 101
Score = 44.1 bits (22), Expect = 8e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 194 ctgattgagccgcgccaatatc 215
||||||||||||||||||||||
Sbjct: 68 ctgattgagccgcgccaatatc 89
>RF00643;MIR171_1;ABXC01002454.1/83659-83541 4558:Sorghum bicolor
(sorghum)
Length = 119
Score = 44.1 bits (22), Expect = 8e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 194 ctgattgagccgcgccaatatc 215
||||||||||||||||||||||
Sbjct: 86 ctgattgagccgcgccaatatc 107
>RF00643;MIR171_1;AP003573.3/25796-25895 39947:Oryza sativa Japonica
Group
Length = 100
Score = 44.1 bits (22), Expect = 8e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 194 ctgattgagccgcgccaatatc 215
||||||||||||||||||||||
Sbjct: 67 ctgattgagccgcgccaatatc 88
