miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00643;MIR171_1;AC189627.2/36180-36072 51351:Brassica rapa subsp.
           pekinensis
          Length = 109

 Score = 44.1 bits (22), Expect = 8e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 195 ctgattgagccgcgccaatatc 216
           ||||||||||||||||||||||
Sbjct: 76  ctgattgagccgcgccaatatc 97




>RF00643;MIR171_1;EU549097.1/220-333 3702:Arabidopsis thaliana
           (thale cress)
          Length = 114

 Score = 44.1 bits (22), Expect = 8e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 195 ctgattgagccgcgccaatatc 216
           ||||||||||||||||||||||
Sbjct: 81  ctgattgagccgcgccaatatc 102




>RF00643;MIR171_1;AP010316.1/5761-5862 34305:Lotus japonicus
          Length = 102

 Score = 44.1 bits (22), Expect = 8e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 195 ctgattgagccgcgccaatatc 216
           ||||||||||||||||||||||
Sbjct: 69  ctgattgagccgcgccaatatc 90




>RF00643;MIR171_1;CAAP02000222.1/31256-31356 29760:Vitis vinifera
          Length = 101

 Score = 44.1 bits (22), Expect = 8e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 195 ctgattgagccgcgccaatatc 216
           ||||||||||||||||||||||
Sbjct: 68  ctgattgagccgcgccaatatc 89




>RF00643;MIR171_1;ABXC01002454.1/83659-83541 4558:Sorghum bicolor
           (sorghum)
          Length = 119

 Score = 44.1 bits (22), Expect = 8e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 195 ctgattgagccgcgccaatatc 216
           ||||||||||||||||||||||
Sbjct: 86  ctgattgagccgcgccaatatc 107




>RF00643;MIR171_1;AP003573.3/25796-25895 39947:Oryza sativa Japonica
           Group
          Length = 100

 Score = 44.1 bits (22), Expect = 8e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 195 ctgattgagccgcgccaatatc 216
           ||||||||||||||||||||||
Sbjct: 67  ctgattgagccgcgccaatatc 88