miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00677;MIR168;AASG02009178.1/8089-7934 3988:Ricinus communis
(castor bean)
Length = 156
Score = 79.8 bits (40), Expect = 1e-14
Identities = 46/48 (95%)
Strand = Plus / Plus
Query: 21 cggcggtctctaattcgcttggtgcaggtcgggaactgtttcgctttt 68
|||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct: 5 cggcggtctctaattcgcttggtgcaggtcgggaactgattggctttt 52
Score = 61.9 bits (31), Expect = 4e-09
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 162 gaattggatcccgccttgcatcaactgaatc 192
|||||||||||||||||||||||||||||||
Sbjct: 110 gaattggatcccgccttgcatcaactgaatc 140
>RF00677;MIR168;AARH01009157.1/137211-137057 3694:Populus
trichocarpa
Length = 155
Score = 77.8 bits (39), Expect = 6e-14
Identities = 42/43 (97%)
Strand = Plus / Plus
Query: 21 cggcggtctctaattcgcttggtgcaggtcgggaactgtttcg 63
|||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 5 cggcggtctctaattcgcttggtgcaggtcgggaactgattcg 47
Score = 69.9 bits (35), Expect = 1e-11
Identities = 44/47 (93%)
Strand = Plus / Plus
Query: 162 gaattggatcccgccttgcatcaactgaatccgagacagcgatgaag 208
||||||||||||||||||||||||||||||| ||||| ||| |||||
Sbjct: 109 gaattggatcccgccttgcatcaactgaatcggagaccgcggtgaag 155
>RF00677;MIR168;ABIM01019962.1/1-76 3649:Carica papaya (papaya)
Length = 76
Score = 73.8 bits (37), Expect = 9e-13
Identities = 46/49 (93%)
Strand = Plus / Plus
Query: 159 agcgaattggatcccgccttgcatcaactgaatccgagacagcgatgaa 207
|||||||||||||||||||||||||||||||||| ||||| ||| ||||
Sbjct: 27 agcgaattggatcccgccttgcatcaactgaatcggagaccgcggtgaa 75
>RF00677;MIR168;EF145817.1/52-230 3694:Populus trichocarpa
Length = 179
Score = 69.9 bits (35), Expect = 1e-11
Identities = 41/43 (95%)
Strand = Plus / Plus
Query: 21 cggcggtctctaattcgcttggtgcaggtcgggaactgtttcg 63
||||||||||| |||||||||||||||||||||||||| ||||
Sbjct: 5 cggcggtctctgattcgcttggtgcaggtcgggaactgattcg 47
Score = 67.9 bits (34), Expect = 6e-11
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 159 agcgaattggatcccgccttgcatcaactgaatc 192
||||||||||||||||||||||||||||||||||
Sbjct: 130 agcgaattggatcccgccttgcatcaactgaatc 163
>RF00677;MIR168;AM900009.1/86-211 50463:Cardamine hirsuta (hairy
bittercress)
Length = 126
Score = 67.9 bits (34), Expect = 6e-11
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 21 cggcggtctctaattcgcttggtgcaggtcgggaactg 58
||||||||||| ||||||||||||||||||||||||||
Sbjct: 5 cggcggtctctgattcgcttggtgcaggtcgggaactg 42
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 170 tcccgccttgcatcaactgaatc 192
|||||||||||||||||||||||
Sbjct: 88 tcccgccttgcatcaactgaatc 110
>RF00677;MIR168;CU302345.1/65608-65728 3880:Medicago truncatula
(barrel medic)
Length = 121
Score = 67.9 bits (34), Expect = 6e-11
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 23 gcggtctctaattcgcttggtgcaggtcgggaac 56
||||||||||||||||||||||||||||||||||
Sbjct: 7 gcggtctctaattcgcttggtgcaggtcgggaac 40
Score = 61.9 bits (31), Expect = 4e-09
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 162 gaattggatcccgccttgcatcaactgaatc 192
|||||||||||||||||||||||||||||||
Sbjct: 75 gaattggatcccgccttgcatcaactgaatc 105
>RF00677;MIR168;CAAP02004587.1/23864-24010 29760:Vitis vinifera
Length = 147
Score = 63.9 bits (32), Expect = 9e-10
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 25 ggtctctaattcgcttggtgcaggtcgggaac 56
||||||||||||||||||||||||||||||||
Sbjct: 9 ggtctctaattcgcttggtgcaggtcgggaac 40
Score = 54.0 bits (27), Expect = 9e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 168 gatcccgccttgcatcaactgaatccgagac 198
||||||||||||||||||||||||| |||||
Sbjct: 107 gatcccgccttgcatcaactgaatcggagac 137
>RF00677;MIR168;AM900031.1/134-271 50463:Cardamine hirsuta (hairy
bittercress)
Length = 138
Score = 61.9 bits (31), Expect = 4e-09
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 162 gaattggatcccgccttgcatcaactgaatc 192
|||||||||||||||||||||||||||||||
Sbjct: 91 gaattggatcccgccttgcatcaactgaatc 121
Score = 50.1 bits (25), Expect = 1e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 33 attcgcttggtgcaggtcgggaact 57
|||||||||||||||||||||||||
Sbjct: 17 attcgcttggtgcaggtcgggaact 41
>RF00677;MIR168;AM900013.1/66-191 313683:Malcolmia maritima
Length = 126
Score = 60.0 bits (30), Expect = 1e-08
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 21 cggcggtctctaattcgcttggtgcaggtcgggaactg 58
|||||||||| ||||||||||||||||||||||||||
Sbjct: 5 cggcggtctcagattcgcttggtgcaggtcgggaactg 42
>RF00677;MIR168;AM900011.1/89-224 71322:Calepina irregularis
Length = 136
Score = 60.0 bits (30), Expect = 1e-08
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 21 cggcggtctctaattcgcttggtgcaggtcgggaactg 58
|||||||||| ||||||||||||||||||||||||||
Sbjct: 5 cggcggtctcggattcgcttggtgcaggtcgggaactg 42
Score = 52.0 bits (26), Expect = 3e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 167 ggatcccgccttgcatcaactgaatc 192
||||||||||||||||||||||||||
Sbjct: 95 ggatcccgccttgcatcaactgaatc 120
>RF00677;MIR168;AB020744.1/40369-40244 3702:Arabidopsis thaliana
(thale cress)
Length = 126
Score = 60.0 bits (30), Expect = 1e-08
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 21 cggcggtctctaattcgcttggtgcaggtcgggaactg 58
|||||||||| ||||||||||||||||||||||||||
Sbjct: 5 cggcggtctcggattcgcttggtgcaggtcgggaactg 42
>RF00677;MIR168;AM900039.1/133-271 98038:Thellungiella halophila
Length = 139
Score = 58.0 bits (29), Expect = 5e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 164 attggatcccgccttgcatcaactgaatc 192
|||||||||||||||||||||||||||||
Sbjct: 93 attggatcccgccttgcatcaactgaatc 121
Score = 50.1 bits (25), Expect = 1e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 33 attcgcttggtgcaggtcgggaact 57
|||||||||||||||||||||||||
Sbjct: 17 attcgcttggtgcaggtcgggaact 41
>RF00677;MIR168;AM900025.1/123-261 81982:Pseudoturritis turrita
Length = 139
Score = 58.0 bits (29), Expect = 5e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 164 attggatcccgccttgcatcaactgaatc 192
|||||||||||||||||||||||||||||
Sbjct: 93 attggatcccgccttgcatcaactgaatc 121
Score = 52.0 bits (26), Expect = 3e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 33 attcgcttggtgcaggtcgggaactg 58
||||||||||||||||||||||||||
Sbjct: 17 attcgcttggtgcaggtcgggaactg 42
>RF00677;MIR168;AM900027.1/105-243 71232:Erysimum cheiri
Length = 139
Score = 58.0 bits (29), Expect = 5e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 164 attggatcccgccttgcatcaactgaatc 192
|||||||||||||||||||||||||||||
Sbjct: 94 attggatcccgccttgcatcaactgaatc 122
Score = 48.1 bits (24), Expect = 5e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 33 attcgcttggtgcaggtcgggaac 56
||||||||||||||||||||||||
Sbjct: 17 attcgcttggtgcaggtcgggaac 40
>RF00677;MIR168;AM900030.1/155-291 264402:Capsella grandiflora
Length = 137
Score = 58.0 bits (29), Expect = 5e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 164 attggatcccgccttgcatcaactgaatc 192
|||||||||||||||||||||||||||||
Sbjct: 91 attggatcccgccttgcatcaactgaatc 119
Score = 48.1 bits (24), Expect = 5e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 33 attcgcttggtgcaggtcgggaac 56
||||||||||||||||||||||||
Sbjct: 17 attcgcttggtgcaggtcgggaac 40
>RF00677;MIR168;DQ108858.1/128-269 3702:Arabidopsis thaliana (thale
cress)
Length = 142
Score = 58.0 bits (29), Expect = 5e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 164 attggatcccgccttgcatcaactgaatc 192
|||||||||||||||||||||||||||||
Sbjct: 97 attggatcccgccttgcatcaactgaatc 125
Score = 48.1 bits (24), Expect = 5e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 33 attcgcttggtgcaggtcgggaac 56
||||||||||||||||||||||||
Sbjct: 17 attcgcttggtgcaggtcgggaac 40
>RF00677;MIR168;AM900001.1/83-191 72657:Aethionema grandiflorum
Length = 109
Score = 58.0 bits (29), Expect = 5e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 168 gatcccgccttgcatcaactgaatccgag 196
|||||||||||||||||||||||||||||
Sbjct: 69 gatcccgccttgcatcaactgaatccgag 97
Score = 52.0 bits (26), Expect = 3e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 33 attcgcttggtgcaggtcgggaactg 58
||||||||||||||||||||||||||
Sbjct: 17 attcgcttggtgcaggtcgggaactg 42
>RF00677;MIR168;AM900008.1/99-224 264402:Capsella grandiflora
Length = 126
Score = 52.0 bits (26), Expect = 3e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 33 attcgcttggtgcaggtcgggaactg 58
||||||||||||||||||||||||||
Sbjct: 17 attcgcttggtgcaggtcgggaactg 42
>RF00677;MIR168;AM900033.1/151-286 71322:Calepina irregularis
Length = 136
Score = 52.0 bits (26), Expect = 3e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 33 attcgcttggtgcaggtcgggaactg 58
||||||||||||||||||||||||||
Sbjct: 17 attcgcttggtgcaggtcgggaactg 42
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 170 tcccgccttgcatcaactgaatc 192
|||||||||||||||||||||||
Sbjct: 98 tcccgccttgcatcaactgaatc 120
>RF00677;MIR168;AM900024.1/109-239 72657:Aethionema grandiflorum
Length = 131
Score = 52.0 bits (26), Expect = 3e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 33 attcgcttggtgcaggtcgggaactg 58
||||||||||||||||||||||||||
Sbjct: 17 attcgcttggtgcaggtcgggaactg 42
>RF00677;MIR168;AM900035.1/113-248 264416:Diplotaxis tenuifolia
Length = 136
Score = 50.1 bits (25), Expect = 1e-05
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 164 attggatcccgccttgcatcaactgaatc 192
||||| |||||||||||||||||||||||
Sbjct: 90 attggctcccgccttgcatcaactgaatc 118
Score = 44.1 bits (22), Expect = 8e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 33 attcgcttggtgcaggtcggga 54
||||||||||||||||||||||
Sbjct: 17 attcgcttggtgcaggtcggga 38
>RF00677;MIR168;AC232514.1/122335-122471 51351:Brassica rapa subsp.
pekinensis
Length = 137
Score = 50.1 bits (25), Expect = 1e-05
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 164 attggatcccgccttgcatcaactgaatc 192
|||||||||||||||||||||| ||||||
Sbjct: 91 attggatcccgccttgcatcaaatgaatc 119
Score = 48.1 bits (24), Expect = 5e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 33 attcgcttggtgcaggtcgggaac 56
||||||||||||||||||||||||
Sbjct: 17 attcgcttggtgcaggtcgggaac 40
>RF00677;MIR168;CU302337.1/59396-59285 3880:Medicago truncatula
(barrel medic)
Length = 112
Score = 50.1 bits (25), Expect = 1e-05
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 28 ctctaattcgcttggtgcaggtcgggaac 56
|||| ||||||||||||||||||||||||
Sbjct: 12 ctctgattcgcttggtgcaggtcgggaac 40
>RF00677;MIR168;AM900012.1/30-111 264416:Diplotaxis tenuifolia
Length = 82
Score = 44.1 bits (22), Expect = 8e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 167 ggatcccgccttgcatcaactgaatccgag 196
|||||| ||||| |||||||||||||||||
Sbjct: 41 ggatcctgccttccatcaactgaatccgag 70
