miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00445;mir-399;AAAA02019779.1/19949-19837 39946:Oryza sativa
Indica Group
Length = 113
Score = 65.9 bits (33), Expect = 9e-11
Identities = 39/41 (95%)
Strand = Plus / Plus
Query: 1 cagtgcagttctcctctggcatggatgctaatgtagcaggc 41
|||||||||||||||||||||||||||| || |||||||||
Sbjct: 11 cagtgcagttctcctctggcatggatgccaacgtagcaggc 51
>RF00445;mir-399;ABXC01006771.1/37202-37314 4558:Sorghum bicolor
(sorghum)
Length = 113
Score = 56.0 bits (28), Expect = 9e-08
Identities = 79/96 (82%)
Strand = Plus / Plus
Query: 1 cagtgcagttctcctctggcatggatgctaatgtagcaggccctgcacaatggactatgc 60
|||||| |||||||||||||||||| || || |||||||| || | |||| || ||
Sbjct: 11 cagtgcggttctcctctggcatggaggccaacatagcaggcattggagaatgcacagcgc 70
Query: 61 tatcactgtccctgccaaaggagaattaccctgcca 96
|||| | ||||||||||||||||||| ||||||||
Sbjct: 71 tatcgccatccctgccaaaggagaattgccctgcca 106
>RF00445;mir-399;AP008208.1/7649784-7649899 39947:Oryza sativa
Japonica Group
Length = 116
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1 cagtgcagttctcctctggcatgga 25
|||||||||||||||||||||||||
Sbjct: 11 cagtgcagttctcctctggcatgga 35
