miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00920;MIR444;EU971967.1/288-421 4577:Zea mays
Length = 134
Score = 73.8 bits (37), Expect = 4e-13
Identities = 44/45 (97%), Gaps = 1/45 (2%)
Strand = Plus / Plus
Query: 67 atgattttaccg-aagttatgcagttgctgcctcaagcttgctgc 110
|||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 79 atgattttaccgcaagttatgcagttgctgcctcaagcttgctgc 123
>RF00920;MIR444;AK063114.1/148-276 39947:Oryza sativa Japonica Group
Length = 129
Score = 63.9 bits (32), Expect = 4e-10
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 79 aagttatgcagttgctgcctcaagcttgctgc 110
||||||||||||||||||||||||||||||||
Sbjct: 87 aagttatgcagttgctgcctcaagcttgctgc 118
>RF00920;MIR444;EU948115.1/123-251 4577:Zea mays
Length = 129
Score = 56.0 bits (28), Expect = 1e-07
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 79 aagttatgcagttgctgcctcaagcttgctgc 110
||||||||||||||||||||||||||| ||||
Sbjct: 87 aagttatgcagttgctgcctcaagcttcctgc 118
>RF00920;MIR444;AK249841.1/242-414 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 173
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 85 tgcagttgctgcctcaagcttgctgc 110
||||||||||||||||||||||||||
Sbjct: 137 tgcagttgctgcctcaagcttgctgc 162
>RF00920;MIR444;EU971312.1/141-369 4577:Zea mays
Length = 229
Score = 48.1 bits (24), Expect = 2e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 79 aagttatgcagttgctgcctcaagcttgctgc 110
||||| |||||||| |||||||||||||||||
Sbjct: 197 aagttgtgcagttgttgcctcaagcttgctgc 228
>RF00920;MIR444;EU947901.1/68-234 4577:Zea mays
Length = 167
Score = 48.1 bits (24), Expect = 2e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 79 aagttatgcagttgctgcctcaagcttgctgc 110
||||| |||||||| |||||||||||||||||
Sbjct: 125 aagttgtgcagttgttgcctcaagcttgctgc 156
>RF00920;MIR444;BT065873.1/353-482 4577:Zea mays
Length = 130
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 83 tatgcagttgctgcctcaagcttgctgc 110
||||||||||||||||| ||||||||||
Sbjct: 39 tatgcagttgctgcctctagcttgctgc 12
>RF00920;MIR444;CU406550.1/236-400 4529:Oryza rufipogon
Length = 165
Score = 48.1 bits (24), Expect = 2e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 79 aagttatgcagttgctgcctcaagcttgctgc 110
||||| |||||||| |||||||||||||||||
Sbjct: 123 aagttgtgcagttgttgcctcaagcttgctgc 154
