miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;FJ234838.1/106075-106199 29664:Brachypodium
sylvaticum
Length = 125
Score = 67.9 bits (34), Expect = 3e-11
Identities = 52/58 (89%)
Strand = Plus / Minus
Query: 24 tactccctccgtccgatattaagtggcattctattacatgtatctaaacgttttttaa 81
|||||||||||||| ||||||| || | |||||||||||||||||| ||| |||||||
Sbjct: 121 tactccctccgtcccatattaattgactttctattacatgtatctagacgctttttaa 64
>RF00906;MIR1122;EF059989.1/24895-24770 29664:Brachypodium
sylvaticum
Length = 126
Score = 67.9 bits (34), Expect = 3e-11
Identities = 49/54 (90%)
Strand = Plus / Plus
Query: 24 tactccctccgtccgatattaagtggcattctattacatgtatctaaacgtttt 77
|||||||||||||| | |||||||| | |||||||||||||||||| |||||||
Sbjct: 5 tactccctccgtcccaaattaagtgactttctattacatgtatctagacgtttt 58
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 23 ctactccctccgtccgatattaagtg 48
||||||||||||||| ||||||||||
Sbjct: 123 ctactccctccgtcccatattaagtg 98
>RF00906;MIR1122;EF059989.1/56206-56082 29664:Brachypodium
sylvaticum
Length = 125
Score = 60.0 bits (30), Expect = 7e-09
Identities = 42/46 (91%)
Strand = Plus / Plus
Query: 24 tactccctccgtccgatattaagtggcattctattacatgtatcta 69
|||||||||||||| ||||||||| | ||||||||||||||||||
Sbjct: 5 tactccctccgtcccgtattaagtgactttctattacatgtatcta 50
>RF00906;MIR1122;EU730901.1/58586-58463 15368:Brachypodium
distachyon
Length = 124
Score = 58.0 bits (29), Expect = 3e-08
Identities = 51/57 (89%), Gaps = 1/57 (1%)
Strand = Plus / Minus
Query: 24 tactccctccgtccgatattaagtggcattctattacatgtatctaaacgtttttta 80
||||| |||||||| |||||||||| | | |||||| ||||||||||||||||||||
Sbjct: 120 tactcgctccgtcccatattaagtgacttcctatta-atgtatctaaacgtttttta 65
>RF00906;MIR1122;EF059989.1/365637-365513 29664:Brachypodium
sylvaticum
Length = 125
Score = 58.0 bits (29), Expect = 3e-08
Identities = 50/57 (87%)
Strand = Plus / Minus
Query: 24 tactccctccgtccgatattaagtggcattctattacatgtatctaaacgtttttta 80
|||||||||||||| ||||||| || | |||||||||||| ||||| || |||||||
Sbjct: 121 tactccctccgtcccatattaaatgactttctattacatgcatctagacatttttta 65
>RF00906;MIR1122;EF059989.1/74343-74464 29664:Brachypodium
sylvaticum
Length = 122
Score = 50.1 bits (25), Expect = 7e-06
Identities = 46/53 (86%)
Strand = Plus / Minus
Query: 29 cctccgtccgatattaagtggcattctattacatgtatctaaacgttttttaa 81
||||||||| |||||||||| || |||||||||||||| |||||||||||
Sbjct: 113 cctccgtcctatattaagtgtcaaaacattacatgtatctagacgttttttaa 61
>RF00906;MIR1122;EU730900.1/18513-18389 15368:Brachypodium
distachyon
Length = 125
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 55 tattacatgtatctaaacgtttttta 80
||||||||||||||||||| ||||||
Sbjct: 36 tattacatgtatctaaacgcttttta 61
>RF00906;MIR1122;EF059989.1/67137-67261 29664:Brachypodium
sylvaticum
Length = 125
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 55 tattacatgtatctaaacgtttttta 80
||||||||||||||||||| ||||||
Sbjct: 90 tattacatgtatctaaacgcttttta 65
>RF00906;MIR1122;EU730895.1/43836-43713 15368:Brachypodium
distachyon
Length = 124
Score = 44.1 bits (22), Expect = 4e-04
Identities = 40/46 (86%)
Strand = Plus / Minus
Query: 24 tactccctccgtccgatattaagtggcattctattacatgtatcta 69
|||||||||||||| |||||||||| | |||||||||||||||
Sbjct: 120 tactccctccgtcccatattaagtgtcgaaatattacatgtatcta 75
>RF00906;MIR1122;EF059989.1/352416-352302 29664:Brachypodium
sylvaticum
Length = 115
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 55 tattacatgtatctaaacgtttttta 80
||||||||||||||| ||||||||||
Sbjct: 80 tattacatgtatctagacgtttttta 55
