miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;EU730902.1/34504-34625 15368:Brachypodium
distachyon
Length = 122
Score = 61.9 bits (31), Expect = 1e-09
Identities = 59/67 (88%), Gaps = 1/67 (1%)
Strand = Plus / Minus
Query: 5 tactccctccgtctcaaaataactgacgtggatttgtataagttcttatacaaattcacg 64
|||||||||| || | ||||| |||||||||||||||||| ||| ||||||||| ||||
Sbjct: 118 tactccctccatcccgcaataagtgacgtggatttgtataa-ttcctatacaaatccacg 60
Query: 65 tcactta 71
|||||||
Sbjct: 59 tcactta 53
Score = 56.0 bits (28), Expect = 8e-08
Identities = 34/36 (94%)
Strand = Plus / Minus
Query: 51 tatacaaattcacgtcacttaattcgggacggaggg 86
||||||||| ||||||||||| ||||||||||||||
Sbjct: 44 tatacaaatccacgtcacttatttcgggacggaggg 9
Score = 54.0 bits (27), Expect = 3e-07
Identities = 61/71 (85%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 21 aaataactgacgtggatttgtataagttcttatacaaattcacgtcacttaattcgggac 80
|||||| ||||||||||||||||| | |||||||||| ||||||||||| | |||||
Sbjct: 50 aaataagtgacgtggatttgtataggaa-ttatacaaatccacgtcacttattgcgggat 108
Query: 81 ggagggtgtat 91
|||||| ||||
Sbjct: 109 ggagggagtat 119
Score = 52.0 bits (26), Expect = 1e-06
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 7 ctccctccgtctcaaaataactgacgtggatttgtata 44
||||||||||| | |||||| |||||||||||||||||
Sbjct: 7 ctccctccgtcccgaaataagtgacgtggatttgtata 44
>RF00906;MIR1122;EU730899.1/86003-86096 15368:Brachypodium
distachyon
Length = 94
Score = 61.9 bits (31), Expect = 1e-09
Identities = 55/63 (87%)
Strand = Plus / Minus
Query: 9 ccctccgtctcaaaataactgacgtggatttgtataagttcttatacaaattcacgtcac 68
||||||||| |||||||| ||| ||||||||||||| || |||||||||| || |||||
Sbjct: 86 ccctccgtcccaaaataagtgatgtggatttgtatagatttttatacaaatccatgtcac 27
Query: 69 tta 71
|||
Sbjct: 26 tta 24
Score = 50.1 bits (25), Expect = 5e-06
Identities = 61/73 (83%)
Strand = Plus / Plus
Query: 19 caaaataactgacgtggatttgtataagttcttatacaaattcacgtcacttaattcggg 78
|||||||| |||| ||||||||||||| ||||||||| ||| ||||||| || |||
Sbjct: 19 caaaataagtgacatggatttgtataaaaatctatacaaatccacatcacttattttggg 78
Query: 79 acggagggtgtat 91
|||||||| ||||
Sbjct: 79 acggagggggtat 91
>RF00906;MIR1122;FJ236275.1/674-570 4573:Aegilops speltoides
Length = 105
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 1 catgtactccctccgtctcaaaataa 26
||||||||||||||||||||||||||
Sbjct: 1 catgtactccctccgtctcaaaataa 26
>RF00906;MIR1122;AJ249141.1/1014-910 4513:Hordeum vulgare
Length = 105
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 5 tactccctccgtctcaaaataactg 29
|||||||||||||||||||||||||
Sbjct: 101 tactccctccgtctcaaaataactg 77
>RF00906;MIR1122;DQ995510.1/1615-1718 4513:Hordeum vulgare
Length = 104
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 5 tactccctccgtctcaaaataactg 29
|||||||||||||||||||||||||
Sbjct: 5 tactccctccgtctcaaaataactg 29
>RF00906;MIR1122;AC148487.14/40672-40806 3880:Medicago truncatula
(barrel medic)
Length = 135
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 2 atgtactccctccgtctcaaaata 25
||||||||||||||||||||||||
Sbjct: 2 atgtactccctccgtctcaaaata 25
>RF00906;MIR1122;AY133251.1/901-1005 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 2 atgtactccctccgtctcaaaataactg 29
|||||||||||||||| |||||||||||
Sbjct: 104 atgtactccctccgtcccaaaataactg 77
>RF00906;MIR1122;AAAA02026943.1/18413-18317 39946:Oryza sativa
Indica Group
Length = 97
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 3 tgtactccctccgtctcaaaataa 26
||||||||||||||||||||||||
Sbjct: 95 tgtactccctccgtctcaaaataa 72
>RF00906;MIR1122;AJ234583.1/157-260 4513:Hordeum vulgare
Length = 104
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 4 gtactccctccgtctcaaaataa 26
|||||||||||||||||||||||
Sbjct: 101 gtactccctccgtctcaaaataa 79
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 5 tactccctccgtctcaaaataa 26
||||||||||||||||||||||
Sbjct: 5 tactccctccgtctcaaaataa 26
>RF00906;MIR1122;AK249560.1/988-1092 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 3 tgtactccctccgtctcaaaataactg 29
||||||||||||||| |||||||||||
Sbjct: 103 tgtactccctccgtcccaaaataactg 77
>RF00906;MIR1122;AJ234485.1/114-218 4513:Hordeum vulgare
Length = 105
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 4 gtactccctccgtctcaaaataa 26
|||||||||||||||||||||||
Sbjct: 4 gtactccctccgtctcaaaataa 26
>RF01058;MIR806;AAAA02021561.1/35714-35484 39946:Oryza sativa
Indica Group
Length = 231
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 5 tactccctccgtctcaaaataa 26
||||||||||||||||||||||
Sbjct: 2 tactccctccgtctcaaaataa 23
>RF00906;MIR1122;EU282768.1/632-528 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 5 tactccctccgtctcaaaataa 26
||||||||||||||||||||||
Sbjct: 101 tactccctccgtctcaaaataa 80
>RF00906;MIR1122;EU282770.1/593-711 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 119
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 4 gtactccctccgtctcaaaataactg 29
|||||||||||||| |||||||||||
Sbjct: 116 gtactccctccgtcccaaaataactg 91
>RF00906;MIR1122;EU282771.1/632-528 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 5 tactccctccgtctcaaaataa 26
||||||||||||||||||||||
Sbjct: 101 tactccctccgtctcaaaataa 80
>RF00906;MIR1122;AAAA02022195.1/27114-27226 39946:Oryza sativa
Indica Group
Length = 113
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 5 tactccctccgtctcaaaataa 26
||||||||||||||||||||||
Sbjct: 5 tactccctccgtctcaaaataa 26
>RF00906;MIR1122;FJ581044.1/175385-175266 4538:Oryza glaberrima
(African rice)
Length = 120
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 5 tactccctccgtctcaaaataa 26
||||||||||||||||||||||
Sbjct: 116 tactccctccgtctcaaaataa 95
>RF00906;MIR1122;AAAA02028034.1/27580-27414 39946:Oryza sativa
Indica Group
Length = 167
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 4 gtactccctccgtctcaaaata 25
||||||||||||||||||||||
Sbjct: 4 gtactccctccgtctcaaaata 25
>RF00906;MIR1122;AACV01001520.1/25871-25960 39947:Oryza sativa
Japonica Group
Length = 90
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 4 gtactccctccgtctcaaaataactg 29
|||||||||||||| |||||||||||
Sbjct: 4 gtactccctccgtcccaaaataactg 29
