miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;EU730899.1/86003-86096 15368:Brachypodium
distachyon
Length = 94
Score = 67.9 bits (34), Expect = 2e-11
Identities = 49/54 (90%)
Strand = Plus / Plus
Query: 17 aaataagtgacgtggatttgtacaagaatctatacaaatccatgtcacttattt 70
||||||||||| |||||||||| || |||||||||||||||| ||||||||||
Sbjct: 21 aaataagtgacatggatttgtataaaaatctatacaaatccacatcacttattt 74
Score = 60.0 bits (30), Expect = 5e-09
Identities = 57/66 (86%)
Strand = Plus / Minus
Query: 5 ccctccgtcctgaaataagtgacgtggatttgtacaagaatctatacaaatccatgtcac 64
|||||||||| |||||||||| ||||||||||| | | ||||||||||||||||||
Sbjct: 86 ccctccgtcccaaaataagtgatgtggatttgtatagatttttatacaaatccatgtcac 27
Query: 65 ttattt 70
||||||
Sbjct: 26 ttattt 21
>RF00906;MIR1122;EU730902.1/34504-34625 15368:Brachypodium
distachyon
Length = 122
Score = 65.9 bits (33), Expect = 8e-11
Identities = 49/53 (92%), Gaps = 1/53 (1%)
Strand = Plus / Plus
Query: 17 aaataagtgacgtggatttgtacaagaatctatacaaatccatgtcacttatt 69
|||||||||||||||||||||| | |||| |||||||||||| ||||||||||
Sbjct: 50 aaataagtgacgtggatttgtataggaat-tatacaaatccacgtcacttatt 101
Score = 63.9 bits (32), Expect = 3e-10
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 3 ctccctccgtcctgaaataagtgacgtggatttgta 38
|||||||||||| |||||||||||||||||||||||
Sbjct: 7 ctccctccgtcccgaaataagtgacgtggatttgta 42
Score = 60.0 bits (30), Expect = 5e-09
Identities = 61/70 (87%), Gaps = 1/70 (1%)
Strand = Plus / Minus
Query: 1 tactccctccgtcctgaaataagtgacgtggatttgtacaagaatctatacaaatccatg 60
|||||||||| ||| | ||||||||||||||||||||| || ||||||||||||| |
Sbjct: 118 tactccctccatcccgcaataagtgacgtggatttgtataa-ttcctatacaaatccacg 60
Query: 61 tcacttattt 70
||||||||||
Sbjct: 59 tcacttattt 50
Score = 54.0 bits (27), Expect = 3e-07
Identities = 36/39 (92%)
Strand = Plus / Minus
Query: 46 ctatacaaatccatgtcacttatttcagggcggagggag 84
||||||||||||| |||||||||||| || |||||||||
Sbjct: 45 ctatacaaatccacgtcacttatttcgggacggagggag 7
>RF00906;MIR1122;U29095.1/333-439 4565:Triticum aestivum (bread
wheat)
Length = 107
Score = 46.1 bits (23), Expect = 7e-05
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 1 tactccctccgtcctgaaataagtgac 27
|||||||||||||| ||||||||||||
Sbjct: 103 tactccctccgtcccgaaataagtgac 77
