miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00695;MIR398;EU549614.1/303-407 3702:Arabidopsis thaliana
(thale cress)
Length = 105
Score = 97.6 bits (49), Expect = 2e-20
Identities = 83/93 (89%), Gaps = 1/93 (1%)
Strand = Plus / Plus
Query: 3 tcaaaggagtgtcatgagaacacggatcctcttgtttctttaagatttccactgaaacca 62
||||||||||| |||| |||||| ||||| | ||||||| || ||||||| ||||||||
Sbjct: 8 tcaaaggagtggcatgtgaacacatatcctatagtttcttcaa-atttccattgaaacca 66
Query: 63 ttgagtattgtgttctcaggtcacccctttgaa 95
|||||| ||||||||||||||||||||||||||
Sbjct: 67 ttgagttttgtgttctcaggtcacccctttgaa 99
>RF00695;MIR398;ABIM01000776.1/2623-2725 3649:Carica papaya
(papaya)
Length = 103
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 70 ttgtgttctcaggtcacccctttga 94
|||||||||||||||||||||||||
Sbjct: 72 ttgtgttctcaggtcacccctttga 96
>RF00695;MIR398;CR962131.2/106004-106111 3880:Medicago truncatula
(barrel medic)
Length = 108
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 70 ttgtgttctcaggtcacccctttga 94
|||||||||||||||||||||||||
Sbjct: 77 ttgtgttctcaggtcacccctttga 101
>RF00695;MIR398;AP006112.1/24509-24640 34305:Lotus japonicus
Length = 132
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 70 ttgtgttctcaggtcacccctttga 94
|||||||||||||||||||||||||
Sbjct: 101 ttgtgttctcaggtcacccctttga 125
>RF00695;MIR398;AC232704.1/64360-64470 4081:Solanum lycopersicum
Length = 111
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 70 ttgtgttctcaggtcacccctttg 93
||||||||||||||||||||||||
Sbjct: 80 ttgtgttctcaggtcacccctttg 103
>RF00695;MIR398;AM470404.1/7821-7717 29760:Vitis vinifera
Length = 105
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 70 ttgtgttctcaggtcacccctttg 93
||||||||||||||||||||||||
Sbjct: 74 ttgtgttctcaggtcacccctttg 97
>RF00695;MIR398;AARH01004353.1/90880-90989 3694:Populus trichocarpa
Length = 110
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 71 tgtgttctcaggtcacccctttg 93
|||||||||||||||||||||||
Sbjct: 80 tgtgttctcaggtcacccctttg 102
>RF00695;MIR398;AASG02002548.1/28926-28824 3988:Ricinus communis
(castor bean)
Length = 103
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 71 tgtgttctcaggtcacccctttg 93
|||||||||||||||||||||||
Sbjct: 73 tgtgttctcaggtcacccctttg 95
>RF00695;MIR398;EU869094.1/300-186 39946:Oryza sativa Indica Group
Length = 115
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 71 tgtgttctcaggtcacccctttg 93
|||||||||||||||||||||||
Sbjct: 85 tgtgttctcaggtcacccctttg 107
