miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00943;MIR824;AC189548.2/18653-19283 51351:Brassica rapa subsp.
pekinensis
Length = 631
Score = 1051 bits (530), Expect = 0.0
Identities = 611/636 (96%), Gaps = 8/636 (1%)
Strand = Plus / Plus
Query: 2 ctcgagttgtctttcatgtctagaccatttgtgagaagggattttttgtttgcaccgttc 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ctcgagttgtctttcatgtctagaccatttgtgagaagggattttttgtttgcaccgttc 60
Query: 62 accccactttcaatctgtagtgagtattaaggaaaatagcttgttcaacatatcacacta 121
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 accccactctcaatctgtagtgagtattaaggaaaatagcttgttcaacatatcacacta 120
Query: 122 ctcttttagaaacaatactatattttagatgcttttccagcttgatatacgttgttttgt 181
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ctcttttagaaacaaaactatattttagatgcttttccagcttgatatacgttgttttgt 180
Query: 182 tatgtatatctgtattatcccggctaccaaaacgttaagaaataaggtgaacat---cct 238
|||||||| ||||||| ||||||||||||||||||||||||||||||||||||| ||
Sbjct: 181 tatgtatacctgtattctcccggctaccaaaacgttaagaaataaggtgaacatctcccc 240
Query: 239 aaaacctgcatccaattagaaaggtctaggtcacagatattacttgttatctcttgatta 298
|||||||||||||||||||||||||||||||||||| |||||||| ||||||| |||||
Sbjct: 241 aaaacctgcatccaattagaaaggtctaggtcacagccattacttgctatctctcgatta 300
Query: 299 agctattttatttctatcagcatgatcagatcattcaggagttaagtataaactaaaata 358
||||||||||||||||||| ||| |||||||||||||||||||||||||||| |||||||
Sbjct: 301 agctattttatttctatcatcatcatcagatcattcaggagttaagtataaaataaaata 360
Query: 359 cattaagtccattcatgacatttctggatgctgcatacataatattttccttgtttttgg 418
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 361 cattaagtccattcatgacatttctggatgctgcatacataatatt----ttgtttttgg 416
Query: 419 actatgccacacttcggacagacattttgcctaagagatgtcaaacctctgtctggagtg 478
|||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||
Sbjct: 417 actatgccacacttcggacagacatttttcctacgagatgtcaaacctctgtctggagtg 476
Query: 479 ttagaggtatttcatgatagctaagaacttgaatcttgcactacttagctacactagatt 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 477 ttagaggtatttcatgatagctaagaacttgaatcttgcactacttagctacactagttt 536
Query: 539 acttcatagtaaataacttggggagtgggggaaggtgctgggntattattcccttctcat 598
|||||||||||||||||||||||||| ||||||||||||||| ||||| |||||||||||
Sbjct: 537 acttcatagtaaataacttggggagt-ggggaaggtgctgggttattagtcccttctcat 595
Query: 599 cgatggtctagatgtgcgaggtgactctcattgagg 634
||||||||||||||||||||||||||||||||||||
Sbjct: 596 cgatggtctagatgtgcgaggtgactctcattgagg 631
>RF00943;MIR824;FM164204.1/27-664 3702:Arabidopsis thaliana (thale
cress)
Length = 638
Score = 91.7 bits (46), Expect = 1e-17
Identities = 49/50 (98%)
Strand = Plus / Plus
Query: 585 tattcccttctcatcgatggtctagatgtgcgaggtgactctcattgagg 634
||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 589 tattcccttctcatcgatggtctagatgtgcgaggtgactctcatggagg 638
Score = 81.8 bits (41), Expect = 1e-14
Identities = 50/53 (94%)
Strand = Plus / Plus
Query: 5 gagttgtctttcatgtctagaccatttgtgagaagggattttttgtttgcacc 57
||||||||| |||||||||||||||||||||||||||| ||||||||| ||||
Sbjct: 4 gagttgtctctcatgtctagaccatttgtgagaagggagtttttgtttacacc 56
>RF00943;MIR824;FM164206.1/41-590 3702:Arabidopsis thaliana (thale
cress)
Length = 550
Score = 91.7 bits (46), Expect = 1e-17
Identities = 49/50 (98%)
Strand = Plus / Plus
Query: 585 tattcccttctcatcgatggtctagatgtgcgaggtgactctcattgagg 634
||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 501 tattcccttctcatcgatggtctagatgtgcgaggtgactctcatggagg 550
Score = 89.7 bits (45), Expect = 5e-17
Identities = 51/53 (96%)
Strand = Plus / Plus
Query: 5 gagttgtctttcatgtctagaccatttgtgagaagggattttttgtttgcacc 57
||||||||| |||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 4 gagttgtctctcatgtctagaccatttgtgagaagggagtttttgtttgcacc 56
Score = 46.1 bits (23), Expect = 6e-04
Identities = 39/43 (90%), Gaps = 1/43 (2%)
Strand = Plus / Plus
Query: 87 attaaggaaaatagcttgttcaacatatcacactactctttta 129
|||||||||||||| | |||||||||| |||||||| ||||||
Sbjct: 99 attaaggaaaatag-tagttcaacataccacactaccctttta 140
