miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00943;MIR824;AC189548.2/18653-19283 51351:Brassica rapa subsp.
pekinensis
Length = 631
Score = 1251 bits (631), Expect = 0.0
Identities = 631/631 (100%)
Strand = Plus / Plus
Query: 2 ctcgagttgtctttcatgtctagaccatttgtgagaagggattttttgtttgcaccgttc 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ctcgagttgtctttcatgtctagaccatttgtgagaagggattttttgtttgcaccgttc 60
Query: 62 accccactctcaatctgtagtgagtattaaggaaaatagcttgttcaacatatcacacta 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 accccactctcaatctgtagtgagtattaaggaaaatagcttgttcaacatatcacacta 120
Query: 122 ctcttttagaaacaaaactatattttagatgcttttccagcttgatatacgttgttttgt 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ctcttttagaaacaaaactatattttagatgcttttccagcttgatatacgttgttttgt 180
Query: 182 tatgtatacctgtattctcccggctaccaaaacgttaagaaataaggtgaacatctcccc 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tatgtatacctgtattctcccggctaccaaaacgttaagaaataaggtgaacatctcccc 240
Query: 242 aaaacctgcatccaattagaaaggtctaggtcacagccattacttgctatctctcgatta 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 aaaacctgcatccaattagaaaggtctaggtcacagccattacttgctatctctcgatta 300
Query: 302 agctattttatttctatcatcatcatcagatcattcaggagttaagtataaaataaaata 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 agctattttatttctatcatcatcatcagatcattcaggagttaagtataaaataaaata 360
Query: 362 cattaagtccattcatgacatttctggatgctgcatacataatattttgtttttggacta 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 cattaagtccattcatgacatttctggatgctgcatacataatattttgtttttggacta 420
Query: 422 tgccacacttcggacagacatttttcctacgagatgtcaaacctctgtctggagtgttag 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tgccacacttcggacagacatttttcctacgagatgtcaaacctctgtctggagtgttag 480
Query: 482 aggtatttcatgatagctaagaacttgaatcttgcactacttagctacactagtttactt 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 aggtatttcatgatagctaagaacttgaatcttgcactacttagctacactagtttactt 540
Query: 542 catagtaaataacttggggagtggggaaggtgctgggttattagtcccttctcatcgatg 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 catagtaaataacttggggagtggggaaggtgctgggttattagtcccttctcatcgatg 600
Query: 602 gtctagatgtgcgaggtgactctcattgagg 632
|||||||||||||||||||||||||||||||
Sbjct: 601 gtctagatgtgcgaggtgactctcattgagg 631
>RF00943;MIR824;FM164206.1/41-590 3702:Arabidopsis thaliana (thale
cress)
Length = 550
Score = 89.7 bits (45), Expect = 5e-17
Identities = 51/53 (96%)
Strand = Plus / Plus
Query: 5 gagttgtctttcatgtctagaccatttgtgagaagggattttttgtttgcacc 57
||||||||| |||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 4 gagttgtctctcatgtctagaccatttgtgagaagggagtttttgtttgcacc 56
Score = 85.7 bits (43), Expect = 7e-16
Identities = 46/47 (97%)
Strand = Plus / Plus
Query: 586 tcccttctcatcgatggtctagatgtgcgaggtgactctcattgagg 632
|||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 504 tcccttctcatcgatggtctagatgtgcgaggtgactctcatggagg 550
Score = 46.1 bits (23), Expect = 6e-04
Identities = 39/43 (90%), Gaps = 1/43 (2%)
Strand = Plus / Plus
Query: 87 attaaggaaaatagcttgttcaacatatcacactactctttta 129
|||||||||||||| | |||||||||| |||||||| ||||||
Sbjct: 99 attaaggaaaatag-tagttcaacataccacactaccctttta 140
>RF00943;MIR824;FM164204.1/27-664 3702:Arabidopsis thaliana (thale
cress)
Length = 638
Score = 85.7 bits (43), Expect = 7e-16
Identities = 46/47 (97%)
Strand = Plus / Plus
Query: 586 tcccttctcatcgatggtctagatgtgcgaggtgactctcattgagg 632
|||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 592 tcccttctcatcgatggtctagatgtgcgaggtgactctcatggagg 638
Score = 81.8 bits (41), Expect = 1e-14
Identities = 50/53 (94%)
Strand = Plus / Plus
Query: 5 gagttgtctttcatgtctagaccatttgtgagaagggattttttgtttgcacc 57
||||||||| |||||||||||||||||||||||||||| ||||||||| ||||
Sbjct: 4 gagttgtctctcatgtctagaccatttgtgagaagggagtttttgtttacacc 56
