miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00677;MIR168;AARH01009157.1/137211-137057 3694:Populus
trichocarpa
Length = 155
Score = 75.8 bits (38), Expect = 2e-13
Identities = 38/38 (100%)
Strand = Plus / Plus
Query: 1 accggcggtctctaattcgcttggtgcaggtcgggaac 38
||||||||||||||||||||||||||||||||||||||
Sbjct: 3 accggcggtctctaattcgcttggtgcaggtcgggaac 40
Score = 63.9 bits (32), Expect = 9e-10
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 178 gaattggatcccgccttgcatcaactgaatcg 209
||||||||||||||||||||||||||||||||
Sbjct: 109 gaattggatcccgccttgcatcaactgaatcg 140
>RF00677;MIR168;AASG02009178.1/8089-7934 3988:Ricinus communis
(castor bean)
Length = 156
Score = 75.8 bits (38), Expect = 2e-13
Identities = 38/38 (100%)
Strand = Plus / Plus
Query: 1 accggcggtctctaattcgcttggtgcaggtcgggaac 38
||||||||||||||||||||||||||||||||||||||
Sbjct: 3 accggcggtctctaattcgcttggtgcaggtcgggaac 40
Score = 69.9 bits (35), Expect = 1e-11
Identities = 38/39 (97%)
Strand = Plus / Plus
Query: 178 gaattggatcccgccttgcatcaactgaatcgaaaaccg 216
|||||||||||||||||||||||||||||||||| ||||
Sbjct: 110 gaattggatcccgccttgcatcaactgaatcgaagaccg 148
>RF00677;MIR168;CU302345.1/65608-65728 3880:Medicago truncatula
(barrel medic)
Length = 121
Score = 69.9 bits (35), Expect = 1e-11
Identities = 35/35 (100%)
Strand = Plus / Plus
Query: 5 gcggtctctaattcgcttggtgcaggtcgggaacc 39
|||||||||||||||||||||||||||||||||||
Sbjct: 7 gcggtctctaattcgcttggtgcaggtcgggaacc 41
Score = 63.9 bits (32), Expect = 9e-10
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 178 gaattggatcccgccttgcatcaactgaatcg 209
||||||||||||||||||||||||||||||||
Sbjct: 75 gaattggatcccgccttgcatcaactgaatcg 106
>RF00677;MIR168;ABIM01019962.1/1-76 3649:Carica papaya (papaya)
Length = 76
Score = 67.9 bits (34), Expect = 6e-11
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 176 gcgaattggatcccgccttgcatcaactgaatcg 209
||||||||||||||||||||||||||||||||||
Sbjct: 28 gcgaattggatcccgccttgcatcaactgaatcg 61
>RF00677;MIR168;AM900009.1/86-211 50463:Cardamine hirsuta (hairy
bittercress)
Length = 126
Score = 67.9 bits (34), Expect = 6e-11
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 1 accggcggtctctaattcgcttggtgcaggtcgggaac 38
||||||||||||| ||||||||||||||||||||||||
Sbjct: 3 accggcggtctctgattcgcttggtgcaggtcgggaac 40
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 186 tcccgccttgcatcaactgaatc 208
|||||||||||||||||||||||
Sbjct: 88 tcccgccttgcatcaactgaatc 110
>RF00677;MIR168;EF145817.1/52-230 3694:Populus trichocarpa
Length = 179
Score = 67.9 bits (34), Expect = 6e-11
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 1 accggcggtctctaattcgcttggtgcaggtcgggaac 38
||||||||||||| ||||||||||||||||||||||||
Sbjct: 3 accggcggtctctgattcgcttggtgcaggtcgggaac 40
Score = 67.9 bits (34), Expect = 6e-11
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 176 gcgaattggatcccgccttgcatcaactgaatcg 209
||||||||||||||||||||||||||||||||||
Sbjct: 131 gcgaattggatcccgccttgcatcaactgaatcg 164
>RF00677;MIR168;CAAP02004587.1/23864-24010 29760:Vitis vinifera
Length = 147
Score = 67.9 bits (34), Expect = 6e-11
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 7 ggtctctaattcgcttggtgcaggtcgggaaccg 40
||||||||||||||||||||||||||||||||||
Sbjct: 9 ggtctctaattcgcttggtgcaggtcgggaaccg 42
Score = 52.0 bits (26), Expect = 3e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 184 gatcccgccttgcatcaactgaatcg 209
||||||||||||||||||||||||||
Sbjct: 107 gatcccgccttgcatcaactgaatcg 132
>RF00677;MIR168;AM900031.1/134-271 50463:Cardamine hirsuta (hairy
bittercress)
Length = 138
Score = 63.9 bits (32), Expect = 9e-10
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 178 gaattggatcccgccttgcatcaactgaatcg 209
||||||||||||||||||||||||||||||||
Sbjct: 91 gaattggatcccgccttgcatcaactgaatcg 122
Score = 48.1 bits (24), Expect = 5e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 15 attcgcttggtgcaggtcgggaac 38
||||||||||||||||||||||||
Sbjct: 17 attcgcttggtgcaggtcgggaac 40
>RF00677;MIR168;AM900039.1/133-271 98038:Thellungiella halophila
Length = 139
Score = 60.0 bits (30), Expect = 1e-08
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 180 attggatcccgccttgcatcaactgaatcg 209
||||||||||||||||||||||||||||||
Sbjct: 93 attggatcccgccttgcatcaactgaatcg 122
Score = 48.1 bits (24), Expect = 5e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 15 attcgcttggtgcaggtcgggaac 38
||||||||||||||||||||||||
Sbjct: 17 attcgcttggtgcaggtcgggaac 40
>RF00677;MIR168;AM900025.1/123-261 81982:Pseudoturritis turrita
Length = 139
Score = 60.0 bits (30), Expect = 1e-08
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 180 attggatcccgccttgcatcaactgaatcg 209
||||||||||||||||||||||||||||||
Sbjct: 93 attggatcccgccttgcatcaactgaatcg 122
Score = 48.1 bits (24), Expect = 5e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 15 attcgcttggtgcaggtcgggaac 38
||||||||||||||||||||||||
Sbjct: 17 attcgcttggtgcaggtcgggaac 40
>RF00677;MIR168;AM900013.1/66-191 313683:Malcolmia maritima
Length = 126
Score = 60.0 bits (30), Expect = 1e-08
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 1 accggcggtctctaattcgcttggtgcaggtcgggaac 38
|||||||||||| ||||||||||||||||||||||||
Sbjct: 3 accggcggtctcagattcgcttggtgcaggtcgggaac 40
>RF00677;MIR168;AM900027.1/105-243 71232:Erysimum cheiri
Length = 139
Score = 60.0 bits (30), Expect = 1e-08
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 180 attggatcccgccttgcatcaactgaatcg 209
||||||||||||||||||||||||||||||
Sbjct: 94 attggatcccgccttgcatcaactgaatcg 123
Score = 50.1 bits (25), Expect = 1e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 15 attcgcttggtgcaggtcgggaacc 39
|||||||||||||||||||||||||
Sbjct: 17 attcgcttggtgcaggtcgggaacc 41
>RF00677;MIR168;AM900030.1/155-291 264402:Capsella grandiflora
Length = 137
Score = 60.0 bits (30), Expect = 1e-08
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 180 attggatcccgccttgcatcaactgaatcg 209
||||||||||||||||||||||||||||||
Sbjct: 91 attggatcccgccttgcatcaactgaatcg 120
Score = 50.1 bits (25), Expect = 1e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 15 attcgcttggtgcaggtcgggaacc 39
|||||||||||||||||||||||||
Sbjct: 17 attcgcttggtgcaggtcgggaacc 41
>RF00677;MIR168;AM900011.1/89-224 71322:Calepina irregularis
Length = 136
Score = 60.0 bits (30), Expect = 1e-08
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 1 accggcggtctctaattcgcttggtgcaggtcgggaac 38
|||||||||||| ||||||||||||||||||||||||
Sbjct: 3 accggcggtctcggattcgcttggtgcaggtcgggaac 40
Score = 54.0 bits (27), Expect = 8e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 183 ggatcccgccttgcatcaactgaatcg 209
|||||||||||||||||||||||||||
Sbjct: 95 ggatcccgccttgcatcaactgaatcg 121
>RF00677;MIR168;AB020744.1/40369-40244 3702:Arabidopsis thaliana
(thale cress)
Length = 126
Score = 60.0 bits (30), Expect = 1e-08
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 1 accggcggtctctaattcgcttggtgcaggtcgggaac 38
|||||||||||| ||||||||||||||||||||||||
Sbjct: 3 accggcggtctcggattcgcttggtgcaggtcgggaac 40
>RF00677;MIR168;DQ108858.1/128-269 3702:Arabidopsis thaliana (thale
cress)
Length = 142
Score = 60.0 bits (30), Expect = 1e-08
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 180 attggatcccgccttgcatcaactgaatcg 209
||||||||||||||||||||||||||||||
Sbjct: 97 attggatcccgccttgcatcaactgaatcg 126
Score = 50.1 bits (25), Expect = 1e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 15 attcgcttggtgcaggtcgggaacc 39
|||||||||||||||||||||||||
Sbjct: 17 attcgcttggtgcaggtcgggaacc 41
>RF00677;MIR168;AM900035.1/113-248 264416:Diplotaxis tenuifolia
Length = 136
Score = 52.0 bits (26), Expect = 3e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 180 attggatcccgccttgcatcaactgaatcg 209
||||| ||||||||||||||||||||||||
Sbjct: 90 attggctcccgccttgcatcaactgaatcg 119
Score = 44.1 bits (22), Expect = 8e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 attcgcttggtgcaggtcggga 36
||||||||||||||||||||||
Sbjct: 17 attcgcttggtgcaggtcggga 38
>RF00677;MIR168;AM900008.1/99-224 264402:Capsella grandiflora
Length = 126
Score = 52.0 bits (26), Expect = 3e-06
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 1 accggcggtctctaattcgcttggtgcaggtcgggaac 38
||||||||| || ||||||||||||||||||||||||
Sbjct: 3 accggcggtttcggattcgcttggtgcaggtcgggaac 40
>RF00677;MIR168;AC232514.1/122335-122471 51351:Brassica rapa subsp.
pekinensis
Length = 137
Score = 52.0 bits (26), Expect = 3e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 180 attggatcccgccttgcatcaactgaatcg 209
|||||||||||||||||||||| |||||||
Sbjct: 91 attggatcccgccttgcatcaaatgaatcg 120
Score = 50.1 bits (25), Expect = 1e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 15 attcgcttggtgcaggtcgggaacc 39
|||||||||||||||||||||||||
Sbjct: 17 attcgcttggtgcaggtcgggaacc 41
>RF00677;MIR168;CU302337.1/59396-59285 3880:Medicago truncatula
(barrel medic)
Length = 112
Score = 52.0 bits (26), Expect = 3e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 10 ctctaattcgcttggtgcaggtcgggaacc 39
|||| |||||||||||||||||||||||||
Sbjct: 12 ctctgattcgcttggtgcaggtcgggaacc 41
>RF00677;MIR168;AM900001.1/83-191 72657:Aethionema grandiflorum
Length = 109
Score = 50.1 bits (25), Expect = 1e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 184 gatcccgccttgcatcaactgaatc 208
|||||||||||||||||||||||||
Sbjct: 69 gatcccgccttgcatcaactgaatc 93
Score = 48.1 bits (24), Expect = 5e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 15 attcgcttggtgcaggtcgggaac 38
||||||||||||||||||||||||
Sbjct: 17 attcgcttggtgcaggtcgggaac 40
>RF00677;MIR168;AM900033.1/151-286 71322:Calepina irregularis
Length = 136
Score = 48.1 bits (24), Expect = 5e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 15 attcgcttggtgcaggtcgggaac 38
||||||||||||||||||||||||
Sbjct: 17 attcgcttggtgcaggtcgggaac 40
Score = 48.1 bits (24), Expect = 5e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 186 tcccgccttgcatcaactgaatcg 209
||||||||||||||||||||||||
Sbjct: 98 tcccgccttgcatcaactgaatcg 121
>RF00677;MIR168;AM900024.1/109-239 72657:Aethionema grandiflorum
Length = 131
Score = 48.1 bits (24), Expect = 5e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 15 attcgcttggtgcaggtcgggaac 38
||||||||||||||||||||||||
Sbjct: 17 attcgcttggtgcaggtcgggaac 40
