miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST 


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00638;MIR159;EU869041.1/17-203 39947:Oryza sativa Japonica Group
          Length = 187

 Score = 61.9 bits (31), Expect = 5e-09
 Identities = 31/31 (100%)
 Strand = Plus / Plus

                                          
Query: 1   tttggattgaagggagctctgcatcttgatc 31
           |||||||||||||||||||||||||||||||
Sbjct: 155 tttggattgaagggagctctgcatcttgatc 185





>RF00638;MIR159;EU955086.1/295-527 4577:Zea mays
          Length = 233

 Score = 54.0 bits (27), Expect = 1e-06
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                          
Query: 1   tttggattgaagggagctctgcatcttgatc 31
           ||||||||||||||||||||||||| |||||
Sbjct: 201 tttggattgaagggagctctgcatcctgatc 231





>RF00638;MIR159;ABXC01001787.1/21430-21187 4558:Sorghum bicolor
           (sorghum)
          Length = 244

 Score = 54.0 bits (27), Expect = 1e-06
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                          
Query: 1   tttggattgaagggagctctgcatcttgatc 31
           ||||||||||||||||||||||||| |||||
Sbjct: 212 tttggattgaagggagctctgcatcctgatc 242





>RF00638;MIR159;AP008207.1/17678032-17678305 39947:Oryza sativa
           Japonica Group
          Length = 274

 Score = 54.0 bits (27), Expect = 1e-06
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                      
Query: 1   tttggattgaagggagctctgcatctt 27
           |||||||||||||||||||||||||||
Sbjct: 242 tttggattgaagggagctctgcatctt 268





>RF00638;MIR159;EU947090.1/674-895 4577:Zea mays
          Length = 222

 Score = 48.1 bits (24), Expect = 7e-05
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                       
Query: 1   tttggattgaagggagctctgcatcttg 28
           |||||| |||||||||||||||||||||
Sbjct: 190 tttggagtgaagggagctctgcatcttg 217





>RF00638;MIR159;EU548541.1/320-117 3702:Arabidopsis thaliana (thale
           cress)
          Length = 204

 Score = 46.1 bits (23), Expect = 3e-04
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 1   tttggattgaagggagctctgcatctt 27
           |||||||||||||||||||| ||||||
Sbjct: 172 tttggattgaagggagctctacatctt 198