miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00445;mir-399;AC160628.37/100813-100915 3880:Medicago
truncatula (barrel medic)
Length = 103
Score = 129 bits (65), Expect = 6e-30
Identities = 77/81 (95%)
Strand = Plus / Plus
Query: 1 gggcaatgacttttttggcagtagttcacttgatctttcagatgatgcaaacaaactcac 60
|||||||||||| ||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct: 13 gggcaatgacttctttggcagtagttgacttgatcattcagatgatgcaaacaaactcac 72
Query: 61 tgccaaagaagatttgccccg 81
||||||||||||||||||||
Sbjct: 73 cgccaaagaagatttgccccg 93
>RF00445;mir-399;AARH01002114.1/23429-23543 3694:Populus trichocarpa
Length = 115
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 56 ctcactgccaaagaagatttgccccg 81
||||||||||||||||||||||||||
Sbjct: 80 ctcactgccaaagaagatttgccccg 105
>RF00445;mir-399;AARH01014736.1/14382-14268 3694:Populus trichocarpa
Length = 115
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 56 ctcactgccaaagaagatttgccccg 81
||||||||||||||||||||||||||
Sbjct: 80 ctcactgccaaagaagatttgccccg 105
>RF00445;mir-399;AASG02001979.1/11398-11282 3988:Ricinus communis
(castor bean)
Length = 117
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 56 ctcactgccaaagaagatttgccccg 81
||||||||||||||||||||||||||
Sbjct: 82 ctcactgccaaagaagatttgccccg 107
>RF00445;mir-399;EU626442.1/66161-66296 29730:Gossypium raimondii
Length = 136
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 56 ctcactgccaaagaagatttgccccg 81
||||||||||||| ||||||||||||
Sbjct: 101 ctcactgccaaaggagatttgccccg 126
>RF00445;mir-399;AY632360.1/45897-46033 3635:Gossypium hirsutum
(upland cotton)
Length = 137
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 56 ctcactgccaaagaagatttgccccg 81
||||||||||||| ||||||||||||
Sbjct: 102 ctcactgccaaaggagatttgccccg 127
>RF00445;mir-399;AY632359.1/44840-44976 3635:Gossypium hirsutum
(upland cotton)
Length = 137
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 56 ctcactgccaaagaagatttgccccg 81
||||||||||||| ||||||||||||
Sbjct: 102 ctcactgccaaaggagatttgccccg 127
>RF00445;mir-399;EU626443.1/56309-56427 47615:Gossypioides kirkii
Length = 119
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 56 ctcactgccaaagaagatttgccccg 81
||||||||||||| ||||||||||||
Sbjct: 84 ctcactgccaaaggagatttgccccg 109
>RF00445;mir-399;AASG02001979.1/7364-7257 3988:Ricinus communis
(castor bean)
Length = 108
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 56 ctcactgccaaagaagatttgccccg 81
||||||||||||| ||||||||||||
Sbjct: 73 ctcactgccaaaggagatttgccccg 98
>RF00445;mir-399;AM470981.2/5848-5733 29760:Vitis vinifera
Length = 116
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 56 ctcactgccaaagaagatttgccccg 81
||||||||||||| ||||||||||||
Sbjct: 81 ctcactgccaaaggagatttgccccg 106
