miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF01198;snoR69Y;AC144513.22/80490-80583 3880:Medicago truncatula
(barrel medic)
Length = 94
Score = 119 bits (60), Expect = 2e-26
Identities = 60/60 (100%)
Strand = Plus / Plus
Query: 195 tttagctatgatgacaatgtgtatcccagctcattatgaggcctttttgtaaggtctggg 254
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tttagctatgatgacaatgtgtatcccagctcattatgaggcctttttgtaaggtctggg 60
>RF01198;snoR69Y;AARH01005550.1/217711-217809 3694:Populus
trichocarpa
Length = 99
Score = 67.9 bits (34), Expect = 7e-11
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 217 atcccagctcattatgaggcctttttgtaaggtctggg 254
|||||||||||||||||| |||||||||||||||||||
Sbjct: 27 atcccagctcattatgagacctttttgtaaggtctggg 64
>RF01198;snoR69Y;AASG02008443.1/3761-3660 3988:Ricinus communis
(castor bean)
Length = 102
Score = 67.9 bits (34), Expect = 7e-11
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 217 atcccagctcattatgaggcctttttgtaaggtctggg 254
|||||||||||||||||| |||||||||||||||||||
Sbjct: 29 atcccagctcattatgagacctttttgtaaggtctggg 66
>RF01198;snoR69Y;AARH01017162.1/9831-9933 3694:Populus trichocarpa
Length = 103
Score = 56.0 bits (28), Expect = 3e-07
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 217 atcccagctcattatgaggcctttttgtaagg 248
|||||||||||||||||| |||||||||||||
Sbjct: 29 atcccagctcattatgagacctttttgtaagg 60
>RF01198;snoR69Y;ABIM01011562.1/13037-12932 3649:Carica papaya
(papaya)
Length = 106
Score = 52.0 bits (26), Expect = 4e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 217 atcccagctcattatgaggccttttt 242
||||||||||||||||||||||||||
Sbjct: 30 atcccagctcattatgaggccttttt 55
>RF01198;snoR69Y;AC172870.1/115507-115438 51351:Brassica rapa subsp.
pekinensis
Length = 70
Score = 52.0 bits (26), Expect = 4e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 216 tatcccagctcattatgaggcctttt 241
||||||||||||||||||||||||||
Sbjct: 3 tatcccagctcattatgaggcctttt 28
>RF01198;snoR69Y;AC069159.8/55498-55594 3702:Arabidopsis thaliana
(thale cress)
Length = 97
Score = 44.1 bits (22), Expect = 0.001
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 216 tatcccagctcattatgaggcctttt 241
||||||||||||||||||| ||||||
Sbjct: 26 tatcccagctcattatgagacctttt 51
>RF00070;SNORD29;AC069159.8/55503-55592 3702:Arabidopsis thaliana
(thale cress)
Length = 90
Score = 44.1 bits (22), Expect = 0.001
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 216 tatcccagctcattatgaggcctttt 241
||||||||||||||||||| ||||||
Sbjct: 21 tatcccagctcattatgagacctttt 46
