miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00638;MIR159;AY728409.1/1-184 3694:Populus trichocarpa
Length = 184
Score = 143 bits (72), Expect = 1e-33
Identities = 156/185 (84%), Gaps = 13/185 (7%)
Strand = Plus / Plus
Query: 1 taagagagctttcttcagtccactcatgggtggcggtagggtttaattagctgccgactc 60
||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct: 7 taagagagctttcttcagtccactcatgggtggtagtaggatttaattagctgccgactc 66
Query: 61 attcattcaaatattgagtccaaaaatttcaaatctcaaatggatt---cactaaacgat 117
|||||| |||||| ||||| || | ||| |||| || |||| ||
Sbjct: 67 attcatccaaatactgagttaaagga----------caaggagattacccagtaaatgag 116
Query: 118 tgaatgatgcgggagacaaattgaatcttaagcttcctgtacttggactgaagggagctc 177
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 117 tgaatgatgcgggagacaaattgaatcctaagcttcctgtacttggactgaagggagctc 176
Query: 178 ccttt 182
|||||
Sbjct: 177 ccttt 181
>RF00638;MIR159;AASG02019405.1/2563-2341 3988:Ricinus communis
(castor bean)
Length = 223
Score = 133 bits (67), Expect = 1e-30
Identities = 76/79 (96%)
Strand = Plus / Plus
Query: 1 taagagagctttcttcagtccactcatgggtggcggtagggtttaattagctgccgactc 60
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 8 taagagagctttcttcagtccactcatgggtggcggtaggatttaattagctgccgactc 67
Query: 61 attcattcaaatattgagt 79
|||||| |||||| |||||
Sbjct: 68 attcatccaaatactgagt 86
Score = 129 bits (65), Expect = 1e-29
Identities = 65/65 (100%)
Strand = Plus / Plus
Query: 118 tgaatgatgcgggagacaaattgaatcttaagcttcctgtacttggactgaagggagctc 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 150 tgaatgatgcgggagacaaattgaatcttaagcttcctgtacttggactgaagggagctc 209
Query: 178 ccttt 182
|||||
Sbjct: 210 ccttt 214
>RF00638;MIR159;CR962124.2/16450-16257 3880:Medicago truncatula
(barrel medic)
Length = 194
Score = 121 bits (61), Expect = 4e-27
Identities = 67/69 (97%)
Strand = Plus / Plus
Query: 118 tgaatgatgcgggagacaaattgaatcttaagcttcctgtacttggactgaagggagctc 177
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct: 121 tgaatgatgcgggagacaaattgaatcttaagtttcctatacttggactgaagggagctc 180
Query: 178 ccttttctt 186
|||||||||
Sbjct: 181 ccttttctt 189
>RF00638;MIR159;AM458581.1/27231-27413 29760:Vitis vinifera
Length = 183
Score = 111 bits (56), Expect = 4e-24
Identities = 68/72 (94%)
Strand = Plus / Plus
Query: 110 taaacgattgaatgatgcgggagacaaattgaatcttaagcttcctgtacttggactgaa 169
|||| |||||||||||||||||||||||||| |||||||||| ||||| |||||||||||
Sbjct: 102 taaatgattgaatgatgcgggagacaaattggatcttaagctccctgtgcttggactgaa 161
Query: 170 gggagctccctt 181
||||||||||||
Sbjct: 162 gggagctccctt 173
Score = 97.6 bits (49), Expect = 5e-20
Identities = 68/73 (93%), Gaps = 1/73 (1%)
Strand = Plus / Plus
Query: 2 aagagagctttcttcagtccactcatgggtggcggtagggtttaattagctgccgact-c 60
||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||| |
Sbjct: 9 aagagagctttcttcagtccactcatgggtggcagtaggattgaattagctgccgactcc 68
Query: 61 attcattcaaata 73
|||||| ||||||
Sbjct: 69 attcatccaaata 81
>RF00638;MIR159;BABK01011373.1/1521-1344 34305:Lotus japonicus
Length = 178
Score = 105 bits (53), Expect = 2e-22
Identities = 71/77 (92%)
Strand = Plus / Plus
Query: 104 attcactaaacgattgaatgatgcgggagacaaattgaatcttaagcttcctgtacttgg 163
||||| |||| || ||||||||||||||||||||||| |||||||||||||||| ||||
Sbjct: 91 attcagtaaatgagtgaatgatgcgggagacaaattgtatcttaagcttcctgttattgg 150
Query: 164 actgaagggagctccct 180
|||||||||||||||||
Sbjct: 151 actgaagggagctccct 167
Score = 67.9 bits (34), Expect = 5e-11
Identities = 61/70 (87%)
Strand = Plus / Plus
Query: 3 agagagctttcttcagtccactcatgggtggcggtagggtttaattagctgccgactcat 62
|||||||||||||||||||| |||||||||| || | | ||||||||||||||||||
Sbjct: 10 agagagctttcttcagtccattcatgggtggttataagaatcaattagctgccgactcat 69
Query: 63 tcattcaaat 72
|||| |||||
Sbjct: 70 tcatccaaat 79
>RF00638;MIR159;AARH01001833.1/17947-18134 3694:Populus trichocarpa
Length = 188
Score = 81.8 bits (41), Expect = 3e-15
Identities = 56/61 (91%)
Strand = Plus / Plus
Query: 122 tgatgcgggagacaaattgaatcttaagcttcctgtacttggactgaagggagctccctt 181
|||||||||||||||||| |||||||| |||||| | ||||||||||||||||||||||
Sbjct: 119 tgatgcgggagacaaattaaatcttaaacttcctatcattggactgaagggagctccctt 178
Query: 182 t 182
|
Sbjct: 179 t 179
Score = 44.1 bits (22), Expect = 7e-04
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 42 tttaattagctgccgactcattcattcaaatattgagt 79
||||||||| | ||||||||||||| |||||| |||||
Sbjct: 49 tttaattagttaccgactcattcatccaaatactgagt 86
>RF00638;MIR159;EF091572.1/4-172 4081:Solanum lycopersicum
Length = 169
Score = 75.8 bits (38), Expect = 2e-13
Identities = 57/62 (91%), Gaps = 1/62 (1%)
Strand = Plus / Plus
Query: 118 tgaatgatgcgggag-acaaattgaatcttaagcttcctgtacttggactgaagggagct 176
||||||| ||||||| |||| |||| |||| |||||||||||||||||||||||||||||
Sbjct: 108 tgaatgaagcgggagtacaagttgagtcttgagcttcctgtacttggactgaagggagct 167
Query: 177 cc 178
||
Sbjct: 168 cc 169
Score = 65.9 bits (33), Expect = 2e-10
Identities = 63/73 (86%)
Strand = Plus / Plus
Query: 6 gagctttcttcagtccactcatgggtggcggtagggtttaattagctgccgactcattca 65
|||||||||| ||||||| |||||| || ||||||| |||| ||||||||||||||||
Sbjct: 1 gagctttctttagtccacacatggggaacgatagggttcaatttgctgccgactcattca 60
Query: 66 ttcaaatattgag 78
| ||||| |||||
Sbjct: 61 tccaaatgttgag 73
>RF00638;MIR159;AASG02011104.1/6116-5917 3988:Ricinus communis
(castor bean)
Length = 200
Score = 71.9 bits (36), Expect = 3e-12
Identities = 64/72 (88%), Gaps = 1/72 (1%)
Strand = Plus / Plus
Query: 1 taagagagctttcttcagtccactcatgggtggcggtagggttt-aattagctgccgact 59
|||||||||| ||||||||||||||||||| || | ||| ||| ||||| |||||||||
Sbjct: 8 taagagagctctcttcagtccactcatgggcgggcgaaggttttgaattatctgccgact 67
Query: 60 cattcattcaaa 71
||||||||||||
Sbjct: 68 cattcattcaaa 79
Score = 50.1 bits (25), Expect = 1e-05
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 154 ctgtacttggactgaagggagctcccttt 182
|||| ||||||||||||||||||||||||
Sbjct: 163 ctgtgcttggactgaagggagctcccttt 191
>RF00638;MIR159;AACV01000479.1/66279-66476 39947:Oryza sativa
Japonica Group
Length = 198
Score = 71.9 bits (36), Expect = 3e-12
Identities = 57/64 (89%)
Strand = Plus / Plus
Query: 2 aagagagctttcttcagtccactcatgggtggcggtagggtttaattagctgccgactca 61
|||||||| | |||||||||||||||||| || | |||||| |||||||||||||||||
Sbjct: 9 aagagagcgtccttcagtccactcatgggcggtgctagggtcgaattagctgccgactca 68
Query: 62 ttca 65
||||
Sbjct: 69 ttca 72
>RF00638;MIR159;AM471650.2/47253-47061 29760:Vitis vinifera
Length = 193
Score = 67.9 bits (34), Expect = 5e-11
Identities = 65/73 (89%), Gaps = 3/73 (4%)
Strand = Plus / Plus
Query: 1 taagagagctttcttcagtccactcatgggtggcggtagggttta--attagctgccgac 58
||||||||||| ||||||||||||||||| ||| | ||||| || |||||||||||||
Sbjct: 8 taagagagcttccttcagtccactcatggatgg-gttaggggtttggattagctgccgac 66
Query: 59 tcattcattcaaa 71
|||||||||||||
Sbjct: 67 tcattcattcaaa 79
Score = 48.1 bits (24), Expect = 4e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 154 ctgtacttggactgaagggagctccctt 181
|||| |||||||||||||||||||||||
Sbjct: 156 ctgtgcttggactgaagggagctccctt 183
>RF00638;MIR159;EU946960.1/247-441 4577:Zea mays
Length = 195
Score = 63.9 bits (32), Expect = 7e-10
Identities = 56/64 (87%)
Strand = Plus / Plus
Query: 2 aagagagctttcttcagtccactcatgggtggcggtagggtttaattagctgccgactca 61
|||||||| | |||||||||||||| ||| || | |||||| |||||||||||||||||
Sbjct: 9 aagagagcgtccttcagtccactcaggggcggtgctagggtcgaattagctgccgactca 68
Query: 62 ttca 65
||||
Sbjct: 69 ttca 72
>RF00638;MIR159;ABXC01001681.1/23904-24102 4558:Sorghum bicolor
(sorghum)
Length = 199
Score = 63.9 bits (32), Expect = 7e-10
Identities = 56/64 (87%)
Strand = Plus / Plus
Query: 2 aagagagctttcttcagtccactcatgggtggcggtagggtttaattagctgccgactca 61
|||||||| | |||||||||||||| ||| || | |||||| |||||||||||||||||
Sbjct: 9 aagagagcgtccttcagtccactcaggggcggtgctagggtcgaattagctgccgactca 68
Query: 62 ttca 65
||||
Sbjct: 69 ttca 72
>RF00638;MIR159;AACV01002034.1/2269-2077 39947:Oryza sativa
Japonica Group
Length = 193
Score = 63.9 bits (32), Expect = 7e-10
Identities = 59/68 (86%)
Strand = Plus / Plus
Query: 2 aagagagctttcttcagtccactcatgggtggcggtagggtttaattagctgccgactca 61
||||||||| |||||||||||||| | |||| ||||||||| |||||||||||| |||
Sbjct: 9 aagagagctctcttcagtccactctcagatggctgtagggttttattagctgccgaatca 68
Query: 62 ttcattca 69
| ||||||
Sbjct: 69 tccattca 76
>RF00638;MIR159;AY884227.1/8-182 3694:Populus trichocarpa
Length = 175
Score = 61.9 bits (31), Expect = 3e-09
Identities = 59/67 (88%), Gaps = 1/67 (1%)
Strand = Plus / Plus
Query: 6 gagctttcttcagtccactcatgggtggcggtagggttta-attagctgccgactcattc 64
|||||| ||||||||||||||||| || | ||||||| |||||||||||||||||||
Sbjct: 1 gagcttccttcagtccactcatggacgggcgaagggtttggattagctgccgactcattc 60
Query: 65 attcaaa 71
|||||||
Sbjct: 61 attcaaa 67
Score = 50.1 bits (25), Expect = 1e-05
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 154 ctgtacttggactgaagggagctcccttt 182
|||| ||||||||||||||||||||||||
Sbjct: 147 ctgtgcttggactgaagggagctcccttt 175
>RF00638;MIR159;EU549299.1/339-148 3702:Arabidopsis thaliana (thale
cress)
Length = 192
Score = 56.0 bits (28), Expect = 2e-07
Identities = 57/64 (89%), Gaps = 2/64 (3%)
Strand = Plus / Plus
Query: 118 tgaatgatgcgggagacaaattgaatcttaagcttc-ctgtacttggactgaagggagct 176
||||||||||| |||||||||||| |||| | |||| || | ||||||||||||||||||
Sbjct: 119 tgaatgatgcgagagacaaattgagtcttca-cttctctatgcttggactgaagggagct 177
Query: 177 ccct 180
||||
Sbjct: 178 ccct 181
Score = 48.1 bits (24), Expect = 4e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 2 aagagagctttcttcagtccactcatgg 29
||||||||||||||| ||||||||||||
Sbjct: 9 aagagagctttcttcggtccactcatgg 36
>RF00638;MIR159;AARH01005879.1/28103-28306 3694:Populus
trichocarpa
Length = 204
Score = 56.0 bits (28), Expect = 2e-07
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 39 gggtttaattagctgccgactcattcattcaa 70
||||| ||||||||||||||||||||||||||
Sbjct: 48 gggttgaattagctgccgactcattcattcaa 79
>RF00638;MIR159;ABXC01002190.1/69225-69027 4558:Sorghum bicolor
(sorghum)
Length = 199
Score = 56.0 bits (28), Expect = 2e-07
Identities = 58/68 (85%)
Strand = Plus / Plus
Query: 2 aagagagctttcttcagtccactcatgggtggcggtagggtttaattagctgccgactca 61
||||||||| |||||||||||||| |||| |||| |||| ||||||||||||||||
Sbjct: 9 aagagagctctcttcagtccactctaaaatggctgtagagtttcattagctgccgactca 68
Query: 62 ttcattca 69
| ||||||
Sbjct: 69 tccattca 76
>RF00638;MIR159;CU570967.5/92301-92498 3880:Medicago truncatula
(barrel medic)
Length = 198
Score = 54.0 bits (27), Expect = 7e-07
Identities = 61/71 (85%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 2 aagagagctttcttcagtccactcatgggtggcggtagggttt-aattagctgccgactc 60
||||||||| |||||||||||||||||| | | ||| ||| |||||||||| |||||
Sbjct: 9 aagagagctctcttcagtccactcatggataggaaaaggttttgaattagctgctgactc 68
Query: 61 attcattcaaa 71
|||||||||||
Sbjct: 69 attcattcaaa 79
Score = 50.1 bits (25), Expect = 1e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 159 cttggactgaagggagctccctttt 183
|||||||||||||||||||||||||
Sbjct: 166 cttggactgaagggagctccctttt 190
>RF00638;MIR159;ABIM01001344.1/11584-11387 3649:Carica papaya
(papaya)
Length = 198
Score = 52.0 bits (26), Expect = 3e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 154 ctgtacttggactgaagggagctccctttt 183
|||| |||||||||||||||||||||||||
Sbjct: 161 ctgtgcttggactgaagggagctccctttt 190
Score = 48.1 bits (24), Expect = 4e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 46 attagctgccgactcattcattca 69
||||||||||||||||||||||||
Sbjct: 54 attagctgccgactcattcattca 77
>RF00638;MIR159;AASG02000468.1/24439-24641 3988:Ricinus communis
(castor bean)
Length = 203
Score = 50.1 bits (25), Expect = 1e-05
Identities = 60/71 (84%), Gaps = 3/71 (4%)
Strand = Plus / Plus
Query: 3 agagagctttcttcagtccactcatgggtggcggta---gggtttaattagctgccgact 59
||||||||| |||||| |||||||||| ||| |||| ||| | || || |||||||||
Sbjct: 10 agagagcttccttcagcccactcatggatgggggtaaaggggctgaagtatctgccgact 69
Query: 60 cattcattcaa 70
|||||||||||
Sbjct: 70 cattcattcaa 80
>RF00638;MIR159;CU459032.2/137942-137752 3880:Medicago truncatula
(barrel medic)
Length = 191
Score = 50.1 bits (25), Expect = 1e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 159 cttggactgaagggagctccctttt 183
|||||||||||||||||||||||||
Sbjct: 159 cttggactgaagggagctccctttt 183
Score = 48.1 bits (24), Expect = 4e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 2 aagagagctttcttcagtccactcatgg 29
|||||||||| |||||||||||||||||
Sbjct: 9 aagagagcttccttcagtccactcatgg 36
>RF00638;MIR159;AARH01009765.1/191097-190892 3694:Populus
trichocarpa
Length = 206
Score = 48.1 bits (24), Expect = 4e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 39 gggtttaattagctgccgactcattcattcaa 70
||||| || |||||||||||||||||||||||
Sbjct: 48 gggttgaactagctgccgactcattcattcaa 79
>RF00638;MIR159;AY775959.1/657-850 81985:Capsella rubella
Length = 194
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 160 ttggactgaagggagctcccttt 182
|||||||||||||||||||||||
Sbjct: 163 ttggactgaagggagctcccttt 185
>RF00638;MIR159;BABK01063850.1/1-151 34305:Lotus japonicus
Length = 151
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 45 aattagctgccgactcattcattcaaa 71
|||||||||| ||||||||||||||||
Sbjct: 33 aattagctgctgactcattcattcaaa 59
>RF00638;MIR159;CAAP02000776.1/6894-7088 29760:Vitis vinifera
Length = 195
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 159 cttggactgaagggagctccctt 181
|||||||||||||||||||||||
Sbjct: 163 cttggactgaagggagctccctt 185
>RF00638;MIR159;ABIM01013664.1/2939-3169 3649:Carica papaya (papaya)
Length = 231
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 159 cttggactgaagggagctccct 180
||||||||||||||||||||||
Sbjct: 199 cttggactgaagggagctccct 220
>RF00638;MIR159;ABIM01005798.1/7517-7326 3649:Carica papaya
(papaya)
Length = 192
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 48 tagctgccgactcattcattca 69
||||||||||||||||||||||
Sbjct: 58 tagctgccgactcattcattca 79
>RF00638;MIR159;AASG02014601.1/2536-2726 3988:Ricinus communis
(castor bean)
Length = 191
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 159 cttggactgaagggagctccct 180
||||||||||||||||||||||
Sbjct: 159 cttggactgaagggagctccct 180
