miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00643;MIR171_1;ABIM01004247.1/37375-37272 3649:Carica papaya
(papaya)
Length = 104
Score = 71.9 bits (36), Expect = 2e-12
Identities = 36/36 (100%)
Strand = Plus / Plus
Query: 63 ttgggtcttttaatttgattgagccgtgccaatatc 98
||||||||||||||||||||||||||||||||||||
Sbjct: 57 ttgggtcttttaatttgattgagccgtgccaatatc 92
>RF00643;MIR171_1;AASG02006362.1/4770-4867 3988:Ricinus communis
(castor bean)
Length = 98
Score = 71.9 bits (36), Expect = 2e-12
Identities = 67/76 (88%), Gaps = 1/76 (1%)
Strand = Plus / Plus
Query: 24 gatgttggaacggttcaatcaaatcaaatctcctat-gaattgggtcttttaatttgatt 82
|||||||||| || ||||||||||||||||||| | | ||||||| |||||| |||||
Sbjct: 11 gatgttggaatggctcaatcaaatcaaatctcccaaagttttgggtcctttaatctgatt 70
Query: 83 gagccgtgccaatatc 98
||||||||||||||||
Sbjct: 71 gagccgtgccaatatc 86
>RF00643;MIR171_1;CAAP02001068.1/13036-12938 29760:Vitis vinifera
Length = 99
Score = 67.9 bits (34), Expect = 3e-11
Identities = 67/77 (87%), Gaps = 2/77 (2%)
Strand = Plus / Plus
Query: 24 gatgttggaacggttcaatcaaatcaaatctcctatgaatt--gggtcttttaatttgat 81
|||||||||| || ||||||||||||||||||| | | || ||||| |||||| ||||
Sbjct: 11 gatgttggaatggctcaatcaaatcaaatctcccaagggttttgggtcctttaatctgat 70
Query: 82 tgagccgtgccaatatc 98
|||||||||||||||||
Sbjct: 71 tgagccgtgccaatatc 87
>RF00643;MIR171_1;AY871043.1/2-86 3694:Populus trichocarpa
Length = 85
Score = 63.9 bits (32), Expect = 4e-10
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 63 ttgggtcttttaatttgattgagccgtgccaatatc 98
|||||||||||||| |||||||||||||||||||||
Sbjct: 48 ttgggtcttttaatctgattgagccgtgccaatatc 83
>RF00643;MIR171_1;CAAP02019255.1/437-320 29760:Vitis vinifera
Length = 118
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 69 cttttaatttgattgagccgtgccaatatc 98
||||| ||||||||||||||||||||||||
Sbjct: 77 cttttgatttgattgagccgtgccaatatc 106
>RF00643;MIR171_1;AASG02007113.1/1812-1912 3988:Ricinus communis
(castor bean)
Length = 101
Score = 50.1 bits (25), Expect = 7e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 71 tttaatttgattgagccgtgccaatatcg 99
|||||| ||||||||||||||||||||||
Sbjct: 62 tttaatctgattgagccgtgccaatatcg 90
>RF00643;MIR171_1;EU549150.1/415-315 3702:Arabidopsis thaliana
(thale cress)
Length = 101
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 75 atttgattgagccgtgccaatatc 98
||||||||||||||||||||||||
Sbjct: 66 atttgattgagccgtgccaatatc 89
>RF00643;MIR171_1;AY728471.1/4-115 3694:Populus trichocarpa
Length = 112
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 75 atttgattgagccgtgccaatatc 98
||||||||||||||||||||||||
Sbjct: 87 atttgattgagccgtgccaatatc 110
>RF00643;MIR171_1;AC134967.20/116067-116170 3880:Medicago
truncatula (barrel medic)
Length = 104
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 75 atttgattgagccgtgccaatatc 98
||||||||||||||||||||||||
Sbjct: 69 atttgattgagccgtgccaatatc 92
>RF00643;MIR171_1;AC219214.1/21177-21278 4081:Solanum lycopersicum
Length = 102
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 75 atttgattgagccgtgccaatatc 98
||||||||||||||||||||||||
Sbjct: 67 atttgattgagccgtgccaatatc 90
>RF00643;MIR171_1;CAAP02002421.1/13383-13479 29760:Vitis vinifera
Length = 97
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 71 tttaatttgattgagccgtgccaatatc 98
|||||| |||||||||||||||||||||
Sbjct: 58 tttaatctgattgagccgtgccaatatc 85
>RF00643;MIR171_1;ABIM01014311.1/7039-6927 3649:Carica papaya
(papaya)
Length = 113
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 68 tcttttaatttgattgagccgtgccaatatc 98
||||||| | |||||||||||||||||||||
Sbjct: 73 tcttttagtctgattgagccgtgccaatatc 103
>RF00643;MIR171_1;ABIM01016020.1/2222-2123 3649:Carica papaya
(papaya)
Length = 100
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 76 tttgattgagccgtgccaatatc 98
|||||||||||||||||||||||
Sbjct: 66 tttgattgagccgtgccaatatc 88
>RF00643;MIR171_1;ABIM01002570.1/7961-8103 3649:Carica papaya
(papaya)
Length = 143
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 76 tttgattgagccgtgccaatatc 98
|||||||||||||||||||||||
Sbjct: 109 tttgattgagccgtgccaatatc 131
>RF00643;MIR171_1;ABIM01020876.1/9287-9189 3649:Carica papaya
(papaya)
Length = 99
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 76 tttgattgagccgtgccaatatc 98
|||||||||||||||||||||||
Sbjct: 65 tttgattgagccgtgccaatatc 87
>RF00643;MIR171_1;AY728470.1/5-86 3694:Populus trichocarpa
Length = 82
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 76 tttgattgagccgtgccaatatc 98
|||||||||||||||||||||||
Sbjct: 58 tttgattgagccgtgccaatatc 80
>RF00643;MIR171_1;AASG02001674.1/19617-19518 3988:Ricinus communis
(castor bean)
Length = 100
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 76 tttgattgagccgtgccaatatc 98
|||||||||||||||||||||||
Sbjct: 66 tttgattgagccgtgccaatatc 88
>RF00643;MIR171_1;AASG02000279.1/67999-67862 3988:Ricinus communis
(castor bean)
Length = 138
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 76 tttgattgagccgtgccaatatc 98
|||||||||||||||||||||||
Sbjct: 104 tttgattgagccgtgccaatatc 126
>RF00643;MIR171_1;AASG02019837.1/638-762 3988:Ricinus communis
(castor bean)
Length = 125
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 76 tttgattgagccgtgccaatatc 98
|||||||||||||||||||||||
Sbjct: 91 tttgattgagccgtgccaatatc 113
>RF00643;MIR171_1;AASG02000735.1/28318-28416 3988:Ricinus communis
(castor bean)
Length = 99
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 76 tttgattgagccgtgccaatatc 98
|||||||||||||||||||||||
Sbjct: 65 tttgattgagccgtgccaatatc 87
>RF00643;MIR171_1;AC150705.17/109871-109755 3880:Medicago truncatula
(barrel medic)
Length = 117
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 76 tttgattgagccgtgccaatatc 98
|||||||||||||||||||||||
Sbjct: 83 tttgattgagccgtgccaatatc 105
>RF00643;MIR171_1;BABK01005968.1/2486-2599 34305:Lotus japonicus
Length = 114
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 76 tttgattgagccgtgccaatatc 98
|||||||||||||||||||||||
Sbjct: 80 tttgattgagccgtgccaatatc 102
>RF00643;MIR171_1;BABK01058807.1/722-623 34305:Lotus japonicus
Length = 100
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 76 tttgattgagccgtgccaatatc 98
|||||||||||||||||||||||
Sbjct: 66 tttgattgagccgtgccaatatc 88
>RF00643;MIR171_1;BABK01108397.1/266-409 34305:Lotus japonicus
Length = 144
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 76 tttgattgagccgtgccaatatc 98
|||||||||||||||||||||||
Sbjct: 110 tttgattgagccgtgccaatatc 132
>RF00643;MIR171_1;AC215372.2/27425-27538 4081:Solanum lycopersicum
Length = 114
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 76 tttgattgagccgtgccaatatc 98
|||||||||||||||||||||||
Sbjct: 80 tttgattgagccgtgccaatatc 102
>RF00643;MIR171_1;AM486682.2/2891-2758 29760:Vitis vinifera
Length = 134
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 76 tttgattgagccgtgccaatatc 98
|||||||||||||||||||||||
Sbjct: 100 tttgattgagccgtgccaatatc 122
>RF00643;MIR171_1;AM449096.1/12478-12578 29760:Vitis vinifera
Length = 101
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 76 tttgattgagccgtgccaatatc 98
|||||||||||||||||||||||
Sbjct: 67 tttgattgagccgtgccaatatc 89
>RF00643;MIR171_1;AM446221.1/52246-52149 29760:Vitis vinifera
Length = 98
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 76 tttgattgagccgtgccaatatc 98
|||||||||||||||||||||||
Sbjct: 64 tttgattgagccgtgccaatatc 86
>RF00643;MIR171_1;ABXC01004438.1/173968-173868 4558:Sorghum
bicolor (sorghum)
Length = 101
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 76 tttgattgagccgtgccaatatc 98
|||||||||||||||||||||||
Sbjct: 67 tttgattgagccgtgccaatatc 89
>RF00643;MIR171_1;ABXC01000089.1/209731-209588 4558:Sorghum bicolor
(sorghum)
Length = 144
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 76 tttgattgagccgtgccaatatc 98
|||||||||||||||||||||||
Sbjct: 110 tttgattgagccgtgccaatatc 132
>RF00643;MIR171_1;AY551250.1/5-106 4530:Oryza sativa (rice)
Length = 102
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 76 tttgattgagccgtgccaatatc 98
|||||||||||||||||||||||
Sbjct: 68 tttgattgagccgtgccaatatc 90
>RF00643;MIR171_1;AL606645.2/80760-80660 39947:Oryza sativa
Japonica Group
Length = 101
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 76 tttgattgagccgtgccaatatc 98
|||||||||||||||||||||||
Sbjct: 67 tttgattgagccgtgccaatatc 89
>RF00643;MIR171_1;AY728466.1/3-80 3694:Populus trichocarpa
Length = 78
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 78 tgattgagccgtgccaatatcg 99
||||||||||||||||||||||
Sbjct: 56 tgattgagccgtgccaatatcg 77
>RF00643;MIR171_1;CR962130.3/48254-48370 3880:Medicago truncatula
(barrel medic)
Length = 117
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 76 tttgattgagccgtgccaatat 97
||||||||||||||||||||||
Sbjct: 83 tttgattgagccgtgccaatat 104
>RF00643;MIR171_1;BT069726.1/119-252 4577:Zea mays
Length = 134
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 77 ttgattgagccgtgccaatatc 98
||||||||||||||||||||||
Sbjct: 101 ttgattgagccgtgccaatatc 122
>RF00643;MIR171_1;BT018211.1/119-253 4577:Zea mays
Length = 135
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 77 ttgattgagccgtgccaatatc 98
||||||||||||||||||||||
Sbjct: 102 ttgattgagccgtgccaatatc 123
