miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00653;mir-22;AAGU02129422.1/1672-1588 9785:Loxodonta africana
           (African savanna elephant)
          Length = 85

 Score =  161 bits (81), Expect = 3e-39
 Identities = 84/85 (98%)
 Strand = Plus / Plus

                                                                       
Query: 18  ggctgagccgcagtagttcttcactggcaagctttatgtcctgacccagctaaagctgcc 77
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 1   ggctgagccgcagtagttcttcagtggcaagctttatgtcctgacccagctaaagctgcc 60

                                    
Query: 78  agttgaagaactgttgccctctgcc 102
           |||||||||||||||||||||||||
Sbjct: 61  agttgaagaactgttgccctctgcc 85




>RF00653;mir-22;AAFR03054554.1/22241-22157 13616:Monodelphis
          domestica (gray short-tailed opossum)
          Length = 85

 Score = 89.7 bits (45), Expect = 8e-18
 Identities = 63/69 (91%)
 Strand = Plus / Plus

                                                                      
Query: 22 gagccgcagtagttcttcactggcaagctttatgtcctgacccagctaaagctgccagtt 81
          ||||| ||| ||||||||| |||| ||||||||||| || ||||||||||||||||||||
Sbjct: 5  gagccacagcagttcttcagtggcgagctttatgtcttgtcccagctaaagctgccagtt 64

                   
Query: 82 gaagaactg 90
          |||||||||
Sbjct: 65 gaagaactg 73




>RF00653;mir-22;BAAF04035139.1/3478-3391 8090:Oryzias latipes
          (Japanese medaka)
          Length = 88

 Score = 73.8 bits (37), Expect = 5e-13
 Identities = 69/79 (87%), Gaps = 3/79 (3%)
 Strand = Plus / Plus

                                                                      
Query: 18 ggctgagccgcagtagttcttcactggcaagctttatg---tcctgacccagctaaagct 74
          |||||| || ||| ||||||||||||||||||||||||   || ||  ||||||||||||
Sbjct: 1  ggctgacccacagcagttcttcactggcaagctttatgttctcgtgcaccagctaaagct 60

                             
Query: 75 gccagttgaagaactgttg 93
          ||||| |||||||||||||
Sbjct: 61 gccagctgaagaactgttg 79




>RF00653;mir-22;CR353219.1/89-176 9031:Gallus gallus (chicken)
          Length = 88

 Score = 63.9 bits (32), Expect = 4e-10
 Identities = 61/70 (87%), Gaps = 3/70 (4%)
 Strand = Plus / Plus

                                                                      
Query: 27 gcagtagttcttcactggcaagctttatgtcctgacccag---ctaaagctgccagttga 83
          |||| ||||||||| ||||||||||||||||||   | ||   |||||||||||||||||
Sbjct: 10 gcagcagttcttcagtggcaagctttatgtccttctctagtagctaaagctgccagttga 69

                    
Query: 84 agaactgttg 93
          ||||||||||
Sbjct: 70 agaactgttg 79




>RF00653;mir-22;CAAE01014999.1/1459406-1459318 99883:Tetraodon
          nigroviridis
          Length = 89

 Score = 63.9 bits (32), Expect = 4e-10
 Identities = 62/70 (88%), Gaps = 4/70 (5%)
 Strand = Plus / Plus

                                                                      
Query: 28 cagtagttcttcactggcaagctttatgtcct--gaccc--agctaaagctgccagttga 83
          |||| ||||||||||||| |||||||||||||  |||||   ||||||||||||||||||
Sbjct: 11 cagtcgttcttcactggctagctttatgtcctccgaccccacgctaaagctgccagttga 70

                    
Query: 84 agaactgttg 93
          ||| ||||||
Sbjct: 71 agagctgttg 80




>RF00653;mir-22;BAAF04020956.1/20-107 8090:Oryzias latipes
          (Japanese medaka)
          Length = 88

 Score = 52.0 bits (26), Expect = 2e-06
 Identities = 60/69 (86%), Gaps = 3/69 (4%)
 Strand = Plus / Plus

                                                                      
Query: 28 cagtagttcttcactggcaagctttatgtcc--tgacccagc-taaagctgccagttgaa 84
          |||| ||||||||||||| ||||||||||||   | |||| | |||||||||||||||||
Sbjct: 11 cagtcgttcttcactggctagctttatgtcccacgccccaccgtaaagctgccagttgaa 70

                   
Query: 85 gaactgttg 93
          || ||||||
Sbjct: 71 gagctgttg 79




>RF00653;mir-22;CU442763.9/20980-21067 7955:Danio rerio
          (zebrafish)
          Length = 88

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                      
Query: 66 gctaaagctgccagttgaagaactgttg 93
          |||||||||||||| |||||||||||||
Sbjct: 52 gctaaagctgccagctgaagaactgttg 79




>RF00653;mir-22;BAAF04066287.1/5156-5069 8090:Oryzias latipes
          (Japanese medaka)
          Length = 88

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 33 gttcttcactggcaagctttatgt 56
          ||||||||||||||||||||||||
Sbjct: 16 gttcttcactggcaagctttatgt 39




>RF00653;mir-22;AAWZ01029001.1/2472-2561 28377:Anolis carolinensis
          (green anole)
          Length = 90

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 29/30 (96%), Gaps = 1/30 (3%)
 Strand = Plus / Plus

                                        
Query: 65 agctaaagctgc-cagttgaagaactgttg 93
          |||||||||||| |||||||||||||||||
Sbjct: 52 agctaaagctgcgcagttgaagaactgttg 81




>RF00653;mir-22;CT030218.5/50207-50290 7955:Danio rerio
          (zebrafish)
          Length = 84

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 68 taaagctgccagttgaagaactgttg 93
          ||||||||||||||||||| ||||||
Sbjct: 50 taaagctgccagttgaagagctgttg 75