miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00640;MIR167_1;ABXC01000844.1/72139-72006 4558:Sorghum bicolor
(sorghum)
Length = 134
Score = 54.0 bits (27), Expect = 7e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 16 agtagctgaagctgccagcatgatctcatga 46
|||||||||||||||||||||||||| ||||
Sbjct: 8 agtagctgaagctgccagcatgatctgatga 38
>RF00640;MIR167_1;AP003800.3/19613-19499 39947:Oryza sativa
Japonica Group
Length = 115
Score = 48.1 bits (24), Expect = 5e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 19 agctgaagctgccagcatgatctcatga 46
||||||||||||||||||||||| ||||
Sbjct: 11 agctgaagctgccagcatgatctgatga 38
>RF00640;MIR167_1;EU549029.1/122-486 3702:Arabidopsis thaliana
(thale cress)
Length = 365
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 19 agctgaagctgccagcatgatct 41
|||||||||||||||||||||||
Sbjct: 11 agctgaagctgccagcatgatct 33
>RF00640;MIR167_1;EU549031.1/122-508 3702:Arabidopsis thaliana
(thale cress)
Length = 387
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 19 agctgaagctgccagcatgatct 41
|||||||||||||||||||||||
Sbjct: 11 agctgaagctgccagcatgatct 33
>RF00640;MIR167_1;EU549010.1/122-488 3702:Arabidopsis thaliana
(thale cress)
Length = 367
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 19 agctgaagctgccagcatgatct 41
|||||||||||||||||||||||
Sbjct: 11 agctgaagctgccagcatgatct 33
>RF00640;MIR167_1;ABXC01002259.1/3174-3066 4558:Sorghum bicolor
(sorghum)
Length = 109
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 19 agctgaagctgccagcatgatct 41
|||||||||||||||||||||||
Sbjct: 11 agctgaagctgccagcatgatct 33
>RF00640;MIR167_1;CT828788.1/88-212 39946:Oryza sativa Indica
Group
Length = 125
Score = 46.1 bits (23), Expect = 2e-04
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 9 caccaaaagtagctgaagctgccagcatgatctcatgat 47
||||| |||| | |||||||||||||||||||| |||||
Sbjct: 1 caccacaagttggtgaagctgccagcatgatctgatgat 39
>RF00640;MIR167_1;AAAA02003942.1/33918-33790 39946:Oryza sativa
Indica Group
Length = 129
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 19 agctgaagctgccagcatgatct 41
|||||||||||||||||||||||
Sbjct: 11 agctgaagctgccagcatgatct 33
>RF00640;MIR167_1;AARH01008931.1/3492-3395 3694:Populus
trichocarpa
Length = 98
Score = 44.1 bits (22), Expect = 7e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 16 agtagctgaagctgccagcatgatct 41
||||| ||||||||||||||||||||
Sbjct: 8 agtagttgaagctgccagcatgatct 33
>RF00640;MIR167_1;CAAP02000379.1/24621-24714 29760:Vitis vinifera
Length = 94
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 22 tgaagctgccagcatgatctca 43
||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctca 35
>RF00640;MIR167_1;AAAA02020690.1/41483-41278 39946:Oryza sativa
Indica Group
Length = 206
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 20 gctgaagctgccagcatgatct 41
||||||||||||||||||||||
Sbjct: 12 gctgaagctgccagcatgatct 33
