miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00100;7SK;AAKN02032990.1/25196-24880 10141:Cavia porcellus
(domestic guinea pig)
Length = 317
Score = 52.0 bits (26), Expect = 3e-06
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 130 atctcagcactggggaggcagaggcaggaggatctctg 167
||||||||||| |||||| ||||||||||||||||||
Sbjct: 272 atctcagcactcaggaggctgaggcaggaggatctctg 309
>RF00017;Metazoa_SRP;AAQR01005955.1/921-622 30611:Otolemur garnettii
(small-eared galago)
Length = 300
Score = 50.1 bits (25), Expect = 1e-05
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 138 actggggaggcagaggcaggaggatctct 166
||||||||||| |||||||||||||||||
Sbjct: 36 actggggaggctgaggcaggaggatctct 64
>RF00017;Metazoa_SRP;AAQR01545604.1/2234-2503 30611:Otolemur
garnettii (small-eared galago)
Length = 270
Score = 44.1 bits (22), Expect = 6e-04
Identities = 32/34 (94%), Gaps = 1/34 (2%)
Strand = Plus / Plus
Query: 130 atctcagc-actggggaggcagaggcaggaggat 162
|||||||| ||||||||||| |||||||||||||
Sbjct: 27 atctcagctactggggaggctgaggcaggaggat 60
>RF00017;Metazoa_SRP;ABGA01105886.1/2012-2324 9601:Pongo abelii
(Sumatran orangutan)
Length = 313
Score = 44.1 bits (22), Expect = 6e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 138 actggggaggcagaggcaggaggatc 163
||||||||||| ||||||||||||||
Sbjct: 36 actggggaggctgaggcaggaggatc 61
>RF00017;Metazoa_SRP;AANU01207938.1/13104-13403 9544:Macaca mulatta
(rhesus monkey)
Length = 300
Score = 44.1 bits (22), Expect = 6e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 138 actggggaggcagaggcaggaggatc 163
||||||||||| ||||||||||||||
Sbjct: 36 actggggaggctgaggcaggaggatc 61
>RF00017;Metazoa_SRP;AANU01258203.1/21212-20922 9544:Macaca mulatta
(rhesus monkey)
Length = 291
Score = 44.1 bits (22), Expect = 6e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 138 actggggaggcagaggcaggaggatc 163
||||||||||| ||||||||||||||
Sbjct: 37 actggggaggctgaggcaggaggatc 62
