miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF01902;MIR439;AP005971.2/12591-12686 39947:Oryza sativa Japonica
Group
Length = 96
Score = 180 bits (91), Expect = 2e-45
Identities = 91/91 (100%)
Strand = Plus / Minus
Query: 1 accctgtcgaacaaccgcggttcgacagggatatctatcgaacaaccacagttcgacagg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 95 accctgtcgaacaaccgcggttcgacagggatatctatcgaacaaccacagttcgacagg 36
Query: 61 tacatgtcgaactgcgtcagttcgacagggt 91
|||||||||||||||||||||||||||||||
Sbjct: 35 tacatgtcgaactgcgtcagttcgacagggt 5
>RF01902;MIR439;AP005592.2/37149-37244 39947:Oryza sativa Japonica
Group
Length = 96
Score = 73.8 bits (37), Expect = 3e-13
Identities = 76/89 (85%)
Strand = Plus / Minus
Query: 3 cctgtcgaacaaccgcggttcgacagggatatctatcgaacaaccacagttcgacaggta 62
||||||||||||||| |||||||||||| | |||||||||||| ||||||| |||||
Sbjct: 93 cctgtcgaacaaccgtggttcgacaggggaacctatcgaacaactgtagttcgataggta 34
Query: 63 catgtcgaactgcgtcagttcgacagggt 91
| | |||||| | | ||||||||||||||
Sbjct: 33 cctatcgaaccgtggcagttcgacagggt 5
>RF01902;MIR439;AACV01013301.1/21222-21323 39947:Oryza sativa
Japonica Group
Length = 102
Score = 67.9 bits (34), Expect = 2e-11
Identities = 46/50 (92%)
Strand = Plus / Minus
Query: 42 acaaccacagttcgacaggtacatgtcgaactgcgtcagttcgacagggt 91
||||| ||||||||||||||||||||||||||| | |||||||||||||
Sbjct: 54 acaactacagttcgacaggtacatgtcgaactgttttagttcgacagggt 5
>RF01902;MIR439;AAAA02034869.1/22769-22675 39946:Oryza sativa
Indica Group
Length = 95
Score = 67.9 bits (34), Expect = 2e-11
Identities = 69/78 (88%), Gaps = 2/78 (2%)
Strand = Plus / Minus
Query: 13 aaccgcggttcgacagggatatctatcgaacaaccacagttcgaca-ggtacatgtcgaa 71
||||| ||||||||| || || |||||||||||||||||||||| | ||||| |||||||
Sbjct: 82 aaccgtggttcgacaagg-tacctatcgaacaaccacagttcgatagggtacctgtcgaa 24
Query: 72 ctgcgtcagttcgacagg 89
||||| |||||||||||
Sbjct: 23 ctgcggtagttcgacagg 6
>RF01902;MIR439;AACV01000024.1/3646-3582 39947:Oryza sativa
Japonica Group
Length = 65
Score = 63.9 bits (32), Expect = 3e-10
Identities = 35/36 (97%)
Strand = Plus / Minus
Query: 38 tcgaacaaccacagttcgacaggtacatgtcgaact 73
|||||||||||||||||||||||||| |||||||||
Sbjct: 58 tcgaacaaccacagttcgacaggtacctgtcgaact 23
Score = 44.1 bits (22), Expect = 3e-04
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 50 agttcgacaggtacatgtcgaactgcgtcagttcgacagggt 91
|||||||||||||| |||||||||| | ||||||||||||
Sbjct: 23 agttcgacaggtacctgtcgaactgtggttgttcgacagggt 64
>RF01902;MIR439;AP007227.2/134915-134819 39947:Oryza sativa
Japonica Group
Length = 97
Score = 61.9 bits (31), Expect = 1e-09
Identities = 77/91 (84%), Gaps = 1/91 (1%)
Strand = Plus / Minus
Query: 2 ccctgtcgaacaaccgcggttcgacagggatatctatcgaacaaccacagttcgaca-gg 60
|||||||||||| || ||||||||||| || ||||||||||||||| ||||| | ||
Sbjct: 95 ccctgtcgaacatccatagttcgacaggggtacatatcgaacaaccacaattcgataggg 36
Query: 61 tacatgtcgaactgcgtcagttcgacagggt 91
||| |||||||||||| ||||||||||||
Sbjct: 35 tacctgtcgaactgcgattgttcgacagggt 5
>RF01902;MIR439;AP004585.2/135019-135084 39947:Oryza sativa
Japonica Group
Length = 66
Score = 56.0 bits (28), Expect = 8e-08
Identities = 50/56 (89%), Gaps = 1/56 (1%)
Strand = Plus / Minus
Query: 1 accctgtcgaacaaccgcggttcgacagggatatctatcgaacaaccacagttcga 56
||||| ||||||||||| ||||||| | || || ||||||||||||||||||||||
Sbjct: 65 accctatcgaacaaccgtggttcgataagg-tacctatcgaacaaccacagttcga 11
>RF01902;MIR439;AP008216.1/15295245-15295340 39947:Oryza sativa
Japonica Group
Length = 96
Score = 54.0 bits (27), Expect = 3e-07
Identities = 54/63 (85%)
Strand = Plus / Minus
Query: 1 accctgtcgaacaaccgcggttcgacagggatatctatcgaacaaccacagttcgacagg 60
||||||||||| ||||| |||||||||||| |||||||||||| | ||||||||||
Sbjct: 95 accctgtcgaataaccgtggttcgacagggtaccctatcgaacaactgcggttcgacagg 36
Query: 61 tac 63
|||
Sbjct: 35 tac 33
>RF01902;MIR439;AP003522.3/153467-153562 39947:Oryza sativa
Japonica Group
Length = 96
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 49 cagttcgacaggtacatgtcgaactgc 75
|||||||||||||||||||||||||||
Sbjct: 22 cagttcgacaggtacatgtcgaactgc 48
>RF01902;MIR439;AC231811.1/12186-12090 63629:Oryza minuta
Length = 97
Score = 52.0 bits (26), Expect = 1e-06
Identities = 51/58 (87%), Gaps = 1/58 (1%)
Strand = Plus / Minus
Query: 20 gttcgacagggatatctatcgaacaaccacagttcgac-aggtacatgtcgaactgcg 76
||||||||||| || ||||||||||| ||||||||| |||||| ||||||||||||
Sbjct: 77 gttcgacaggggtacatatcgaacaactgcagttcgacaaggtacctgtcgaactgcg 20
Score = 44.1 bits (22), Expect = 3e-04
Identities = 38/42 (90%), Gaps = 1/42 (2%)
Strand = Plus / Plus
Query: 35 ctatcgaacaaccacagttcgacaggta-catgtcgaactgc 75
||||||||||| | |||||||||||||| | |||||||||||
Sbjct: 8 ctatcgaacaatcgcagttcgacaggtaccttgtcgaactgc 49
>RF01902;MIR439;AC232167.1/68654-68565 63629:Oryza minuta
Length = 90
Score = 50.1 bits (25), Expect = 5e-06
Identities = 49/57 (85%)
Strand = Plus / Minus
Query: 7 tcgaacaaccgcggttcgacagggatatctatcgaacaaccacagttcgacaggtac 63
|||||||||| ||| ||||||| || |||||||||||| |||||||||||||||
Sbjct: 83 tcgaacaaccaaagtttgacaggggtacatatcgaacaaccgcagttcgacaggtac 27
>RF01902;MIR439;AP004113.3/130209-130288 39947:Oryza sativa
Japonica Group
Length = 80
Score = 50.1 bits (25), Expect = 5e-06
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 1 accctgtcgaacaaccgcggttcgacagg 29
||||||||||||||||| |||||||||||
Sbjct: 79 accctgtcgaacaaccgtggttcgacagg 51
>RF01902;MIR439;AP002747.2/5763-5858 39947:Oryza sativa Japonica
Group
Length = 96
Score = 48.1 bits (24), Expect = 2e-05
Identities = 51/60 (85%)
Strand = Plus / Minus
Query: 1 accctgtcgaacaaccgcggttcgacagggatatctatcgaacaaccacagttcgacagg 60
|||||||||||| || | ||||||||||| || ||||||||| || ||||||||||||
Sbjct: 66 accctgtcgaactgccccagttcgacaggggtacctatcgaactgccccagttcgacagg 7
>RF01902;MIR439;AP004233.3/71122-71027 39947:Oryza sativa Japonica
Group
Length = 96
Score = 48.1 bits (24), Expect = 2e-05
Identities = 36/40 (90%)
Strand = Plus / Minus
Query: 51 gttcgacaggtacatgtcgaactgcgtcagttcgacaggg 90
|||||||||||| |||||||||||| | |||||||||||
Sbjct: 45 gttcgacaggtatatgtcgaactgcacccgttcgacaggg 6
>RF01902;MIR439;AAAA02022087.1/7691-7594 39946:Oryza sativa Indica
Group
Length = 98
Score = 44.1 bits (22), Expect = 3e-04
Identities = 38/42 (90%), Gaps = 1/42 (2%)
Strand = Plus / Minus
Query: 36 tatcgaacaaccacagttcgacag-gtacatgtcgaactgcg 76
||||||||||||| | |||||||| |||| ||||||||||||
Sbjct: 62 tatcgaacaaccataattcgacagagtacttgtcgaactgcg 21
>RF01902;MIR439;AC137611.3/143500-143402 39947:Oryza sativa
Japonica Group
Length = 99
Score = 44.1 bits (22), Expect = 3e-04
Identities = 43/50 (86%)
Strand = Plus / Minus
Query: 1 accctgtcgaacaaccgcggttcgacagggatatctatcgaacaaccaca 50
||||||||||||| || | |||||||||| || |||||||||||||||
Sbjct: 98 accctgtcgaacatccacaattcgacaggggtacatatcgaacaaccaca 49
>RF01902;MIR439;AP008210.1/20645862-20645766 39947:Oryza sativa
Japonica Group
Length = 97
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 38 tcgaacaaccacagttcgacag 59
||||||||||||||||||||||
Sbjct: 11 tcgaacaaccacagttcgacag 32
>RF01902;MIR439;AP006157.3/18829-18924 39947:Oryza sativa Japonica
Group
Length = 96
Score = 44.1 bits (22), Expect = 3e-04
Identities = 40/45 (88%), Gaps = 2/45 (4%)
Strand = Plus / Minus
Query: 49 cagttcgacaggtaca--tgtcgaactgcgtcagttcgacagggt 91
||||||||||||||| |||||||||| | ||||||||||||||
Sbjct: 78 cagttcgacaggtacccctgtcgaactggggcagttcgacagggt 34
>RF01902;MIR439;AAHY01163875.1/1287-1365 10090:Mus musculus (house
mouse)
Length = 79
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 1 accctgtcgaacaaccgcggttcgacaggg 30
||||||| ||||||||| ||||||||||||
Sbjct: 78 accctgttgaacaaccgtggttcgacaggg 49
