miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00675;mir-145;AAGW01611070.1/1144-1232 9986:Oryctolagus
cuniculus (rabbit)
Length = 89
Score = 149 bits (75), Expect = 8e-36
Identities = 84/87 (96%)
Strand = Plus / Plus
Query: 4 ccaccttgtcctcacggtccagttttcccaggaatcccttggatgctaagatggggattc 63
||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 1 ccaccttgtcctcggggtccagttttcccaggaatcccttagatgctaagatggggattc 60
Query: 64 ctggaaatactgttcttgaggtcatgg 90
|||||||||||||||||||||||||||
Sbjct: 61 ctggaaatactgttcttgaggtcatgg 87
>RF00675;mir-145;ABRQ01509527.1/1427-1341 9813:Procavia capensis
(cape rock hyrax)
Length = 87
Score = 147 bits (74), Expect = 3e-35
Identities = 83/86 (96%)
Strand = Plus / Plus
Query: 5 caccttgtcctcacggtccagttttcccaggaatcccttggatgctaagatggggattcc 64
||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||
Sbjct: 1 caccttgtcctcacggtccagttttcccaggaatcccttacatgctaagacggggattcc 60
Query: 65 tggaaatactgttcttgaggtcatgg 90
||||||||||||||||||||||||||
Sbjct: 61 tggaaatactgttcttgaggtcatgg 86
>RF00675;mir-145;AAWZ01000591.1/17482-17570 28377:Anolis
carolinensis (green anole)
Length = 89
Score = 117 bits (59), Expect = 3e-26
Identities = 77/83 (92%)
Strand = Plus / Plus
Query: 10 tgtcctcacggtccagttttcccaggaatcccttggatgctaagatggggattcctggaa 69
||||||| ||||||||||||||||||||||||| |||| ||||| ||||||||||||||
Sbjct: 7 tgtcctcggggtccagttttcccaggaatcccttagatgataagagggggattcctggaa 66
Query: 70 atactgttcttgaggtcatggct 92
|||||||||||| ||||||||||
Sbjct: 67 atactgttcttggggtcatggct 89
>RF00675;mir-145;AANG01343499.1/5356-5446 9685:Felis catus
(domestic cat)
Length = 91
Score = 105 bits (53), Expect = 1e-22
Identities = 77/81 (95%), Gaps = 3/81 (3%)
Strand = Plus / Plus
Query: 13 cctcacggtccagtttt-cccaggaatcccttggatgctaagat-ggggatt-cctggaa 69
||||||||||||||||| |||||||||||||| ||||||||||| ||||||| |||||||
Sbjct: 9 cctcacggtccagtttttcccaggaatcccttagatgctaagatgggggattccctggaa 68
Query: 70 atactgttcttgaggtcatgg 90
|||||||||||||||||||||
Sbjct: 69 atactgttcttgaggtcatgg 89
>RF00675;mir-145;CT029999.12/82723-82635 7955:Danio rerio
(zebrafish)
Length = 89
Score = 60.0 bits (30), Expect = 5e-09
Identities = 58/65 (89%), Gaps = 3/65 (4%)
Strand = Plus / Plus
Query: 19 ggtccagttttcccaggaatcccttgg--atgctaagatggggattcctggaaatactgt 76
||||||||||||||||||||||||||| | | || | |||||||||||||||||||||
Sbjct: 15 ggtccagttttcccaggaatcccttgggcaatcgaa-agggggattcctggaaatactgt 73
Query: 77 tcttg 81
|||||
Sbjct: 74 tcttg 78
>RF00675;mir-145;BAAF04072768.1/17019-16930 8090:Oryzias latipes
(Japanese medaka)
Length = 90
Score = 58.0 bits (29), Expect = 2e-08
Identities = 58/65 (89%), Gaps = 2/65 (3%)
Strand = Plus / Plus
Query: 19 ggtccagttttcccaggaatccctt-ggatg-ctaagatggggattcctggaaatactgt 76
||||||||||||||||||||||||| || || | || | ||||||||||||||||||||
Sbjct: 15 ggtccagttttcccaggaatcccttgggctgtcaaaaaaggggattcctggaaatactga 74
Query: 77 tcttg 81
|||||
Sbjct: 75 tcttg 79
>RF00675;mir-145;AANH01007327.1/2171-2260 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 90
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 19 ggtccagttttcccaggaatcccttg 44
||||||||||||||||||||||||||
Sbjct: 15 ggtccagttttcccaggaatcccttg 40
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 56 ggggattcctggaaatactgttcttg 81
||||||||||||||||||||||||||
Sbjct: 54 ggggattcctggaaatactgttcttg 79
