miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00606;SNORD93;CAAA01204778.1/24156-24226 10090:Mus musculus
(house mouse)
Length = 71
Score = 133 bits (67), Expect = 4e-31
Identities = 70/71 (98%)
Strand = Plus / Plus
Query: 12 tggccaaggatgagaactctaacctgactggatacgctgctgtgatgggttaaaggattt 71
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 1 tggccaaggatgagaactctaacctgacaggatacgctgctgtgatgggttaaaggattt 60
Query: 72 acctgaggcca 82
|||||||||||
Sbjct: 61 acctgaggcca 71
>RF00606;SNORD93;AAKN02039012.1/62316-62388 10141:Cavia porcellus
(domestic guinea pig)
Length = 73
Score = 75.8 bits (38), Expect = 9e-14
Identities = 65/73 (89%), Gaps = 2/73 (2%)
Strand = Plus / Plus
Query: 12 tggccaaggatgagaactctaacctgactggatacg--ctgctgtgatgggttaaaggat 69
||||||| ||||||||||||||||||| ||| | | ||||| ||||||||||||||||
Sbjct: 1 tggccaaagatgagaactctaacctgaatggctgtgttctgctctgatgggttaaaggat 60
Query: 70 ttacctgaggcca 82
|||||||||||||
Sbjct: 61 ttacctgaggcca 73
>RF00606;SNORD93;AAEX02025002.1/349113-349184 9615:Canis lupus
familiaris (dog)
Length = 72
Score = 63.9 bits (32), Expect = 3e-10
Identities = 63/72 (87%), Gaps = 1/72 (1%)
Strand = Plus / Plus
Query: 12 tggccaaggatgagaactctaacctgactggatacgctgctgtgatgg-gttaaaggatt 70
||||| |||||||||| ||||| |||| |||||| ||| || |||||| ||| |||||||
Sbjct: 1 tggccgaggatgagaaatctaatctgattggatatgcttctctgatggcgttgaaggatt 60
Query: 71 tacctgaggcca 82
||||||||||||
Sbjct: 61 tacctgaggcca 72
>RF00606;SNORD93;CABD01165145.1/6574-6501 9595:Gorilla gorilla
gorilla (Western lowland gorilla)
Length = 74
Score = 63.9 bits (32), Expect = 3e-10
Identities = 64/74 (86%), Gaps = 3/74 (4%)
Strand = Plus / Plus
Query: 12 tggccaaggatgagaactctaacctgactggatacgct---gctgtgatgggttaaagga 68
|||||||||||||||||||||| |||| | || ||| |||||||||| ||||||||
Sbjct: 1 tggccaaggatgagaactctaatctgattttatgtgcttctgctgtgatggattaaagga 60
Query: 69 tttacctgaggcca 82
||||||||||||||
Sbjct: 61 tttacctgaggcca 74
>RF00606;SNORD93;AAFR03047799.1/14502-14426 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 77
Score = 60.0 bits (30), Expect = 5e-09
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 49 tgctgtgatgggttaaaggatttacctgaggcca 82
|||| |||||||||||||||||||||||||||||
Sbjct: 44 tgctctgatgggttaaaggatttacctgaggcca 77
>RF00606;SNORD93;ABRQ01187172.1/1513-1588 9813:Procavia capensis
(cape rock hyrax)
Length = 76
Score = 60.0 bits (30), Expect = 5e-09
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 49 tgctgtgatgggttaaaggatttacctgaggcca 82
|||| |||||||||||||||||||||||||||||
Sbjct: 43 tgctctgatgggttaaaggatttacctgaggcca 76
>RF00606;SNORD93;ABRO01173541.1/886-959 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 74
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 54 tgatgggttaaaggatttacctgaggcca 82
|||||||||||||||||||||||||||||
Sbjct: 46 tgatgggttaaaggatttacctgaggcca 74
>RF00606;SNORD93;AAYZ01658959.1/746-819 9978:Ochotona princeps
(American pika)
Length = 74
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 54 tgatgggttaaaggatttacctgaggcca 82
|||||||||||||||||||||||||||||
Sbjct: 46 tgatgggttaaaggatttacctgaggcca 74
>RF00606;SNORD93;AAPN01013141.1/5658-5578 9258:Ornithorhynchus
anatinus (platypus)
Length = 81
Score = 52.0 bits (26), Expect = 1e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 49 tgctgtgatgggttaaaggatttacctgaggcca 82
|||| ||||||||||||||||||| |||||||||
Sbjct: 48 tgctctgatgggttaaaggatttagctgaggcca 81
