miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00017;Metazoa_SRP;ABGA01289534.1/9899-10179 9601:Pongo abelii
(Sumatran orangutan)
Length = 281
Score = 52.0 bits (26), Expect = 1e-06
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 21 gtggtggcacacgcctttaatctcagcacttgggaggc 58
|||||||| ||||||| ||||| |||||||||||||||
Sbjct: 8 gtggtggctcacgcctgtaatcccagcacttgggaggc 45
>RF00017;Metazoa_SRP;AC195521.2/80928-80646 9598:Pan troglodytes
(chimpanzee)
Length = 283
Score = 52.0 bits (26), Expect = 1e-06
Identities = 42/46 (91%), Gaps = 1/46 (2%)
Strand = Plus / Plus
Query: 13 gccgggcagtggtggcacacgcctttaatctcagcacttgggaggc 58
|||||||| ||||||| ||||||| ||||| |||||||||||||||
Sbjct: 1 gccgggca-tggtggctcacgcctgtaatcccagcacttgggaggc 45
>RF00017;Metazoa_SRP;ABGA01255151.1/8211-7930 9601:Pongo abelii
(Sumatran orangutan)
Length = 282
Score = 50.1 bits (25), Expect = 6e-06
Identities = 43/49 (87%)
Strand = Plus / Plus
Query: 24 gtggcacacgcctttaatctcagcacttgggaggcagaggtaggcagat 72
||||| || |||| ||||| ||||||||||||||| ||||| |||||||
Sbjct: 11 gtggctcatgcctgtaatcccagcacttgggaggctgaggtgggcagat 59
>RF00017;Metazoa_SRP;AADA01298945.1/4281-4568 9598:Pan troglodytes
(chimpanzee)
Length = 288
Score = 50.1 bits (25), Expect = 6e-06
Identities = 48/53 (90%), Gaps = 2/53 (3%)
Strand = Plus / Plus
Query: 13 gccgggcagtggtggcacacgcctttaatctcagcactt-gggaggcagaggt 64
|||||||| ||||||| ||||||| ||||| |||||||| |||||||||||||
Sbjct: 1 gccgggca-tggtggctcacgcctgtaatcccagcactttgggaggcagaggt 52
>RF00017;Metazoa_SRP;AADB02011926.1/856219-855937 9606:Homo
sapiens (human)
Length = 283
Score = 48.1 bits (24), Expect = 2e-05
Identities = 34/36 (94%), Gaps = 1/36 (2%)
Strand = Plus / Plus
Query: 38 taatctcagcactt-gggaggcagaggtaggcagat 72
|||||||||||||| ||||||| |||||||||||||
Sbjct: 25 taatctcagcactttgggaggctgaggtaggcagat 60
>RF00100;7SK;CAAA01138734.1/41922-41649 10090:Mus musculus (house
mouse)
Length = 274
Score = 48.1 bits (24), Expect = 2e-05
Identities = 45/52 (86%)
Strand = Plus / Plus
Query: 34 cctttaatctcagcacttgggaggcagaggtaggcagatttctgagtttgag 85
||||||||||||||||| ||||||||||| | || || ||||||||||||
Sbjct: 164 cctttaatctcagcactcaggaggcagaggcactcatatctctgagtttgag 215
>RF00017;Metazoa_SRP;AANN01838496.1/951-670 9365:Erinaceus
europaeus (western European hedgehog)
Length = 282
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 22 tggtggcacacgcctttaatctcagc 47
||||||||||||||| ||||||||||
Sbjct: 9 tggtggcacacgcctgtaatctcagc 34
>RF00017;Metazoa_SRP;ABRT010123001.1/1439-1148 9478:Tarsius
syrichta (Philippine tarsier)
Length = 292
Score = 44.1 bits (22), Expect = 4e-04
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 22 tggtggcacacgcctttaatctcagcacttgggaggcagagg 63
||||||||||| || || |||||||||||||||||| ||||
Sbjct: 9 tggtggcacacaccggtagtctcagcacttgggaggctgagg 50
>RF00017;Metazoa_SRP;ABGA01060882.1/5637-5908 9601:Pongo abelii
(Sumatran orangutan)
Length = 272
Score = 44.1 bits (22), Expect = 4e-04
Identities = 38/42 (90%), Gaps = 1/42 (2%)
Strand = Plus / Plus
Query: 24 gtggcacacgcctttaatctcagcactt-gggaggcagaggt 64
||||| ||||||| ||||| |||||||| |||||||||||||
Sbjct: 11 gtggctcacgcctgtaatcccagcactttgggaggcagaggt 52
>RF00017;Metazoa_SRP;ABGA01232481.1/5991-6266 9601:Pongo abelii
(Sumatran orangutan)
Length = 276
Score = 44.1 bits (22), Expect = 4e-04
Identities = 38/42 (90%), Gaps = 1/42 (2%)
Strand = Plus / Plus
Query: 24 gtggcacacgcctttaatctcagcac-ttgggaggcagaggt 64
||||| ||||||| |||||||||||| ||||||||| |||||
Sbjct: 11 gtggctcacgcctgtaatctcagcactttgggaggctgaggt 52
>RF00017;Metazoa_SRP;ABGA01060883.1/329-613 9601:Pongo abelii
(Sumatran orangutan)
Length = 285
Score = 44.1 bits (22), Expect = 4e-04
Identities = 38/42 (90%), Gaps = 1/42 (2%)
Strand = Plus / Plus
Query: 24 gtggcacacgcctttaatctcagcactt-gggaggcagaggt 64
||||| ||||||| ||||| |||||||| |||||||||||||
Sbjct: 11 gtggctcacgcctgtaatcccagcactttgggaggcagaggt 52
>RF00017;Metazoa_SRP;AADD01013186.1/4781-5069 9606:Homo sapiens
(human)
Length = 289
Score = 44.1 bits (22), Expect = 4e-04
Identities = 44/50 (88%), Gaps = 1/50 (2%)
Strand = Plus / Plus
Query: 24 gtggcacacgcctttaatctcagcac-ttgggaggcagaggtaggcagat 72
||||| || |||| ||||| |||||| ||||||||| |||||||||||||
Sbjct: 183 gtggctcatgcctgtaatcccagcaccttgggaggccgaggtaggcagat 232
>RF00017;Metazoa_SRP;AADD01024744.1/29111-29392 9606:Homo sapiens
(human)
Length = 282
Score = 44.1 bits (22), Expect = 4e-04
Identities = 44/50 (88%), Gaps = 1/50 (2%)
Strand = Plus / Plus
Query: 24 gtggcacacgcctttaatctcagcactt-gggaggcagaggtaggcagat 72
||||| ||||||| ||||| || ||||| |||||||||||| ||||||||
Sbjct: 11 gtggctcacgcctgtaatcccaacacttagggaggcagaggcaggcagat 60
