miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00640;MIR167_1;AC212802.1/77650-78085 3694:Populus trichocarpa
Length = 436
Score = 731 bits (369), Expect = 0.0
Identities = 419/435 (96%), Gaps = 6/435 (1%)
Strand = Plus / Plus
Query: 1 tttgagaggttgaagctgccagcatgatctggtaatgaacgtgttactctcatttatata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4 tttgagaggttgaagctgccagcatgatctggtaatgaacgtgttactctcatttatata 63
Query: 61 tatat----taacattaatcttatagcagtatctgtaggtagaaaaaatttaatgttgtc 116
||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct: 64 tatatatattaacattaatcatatagcagtatttgtaggtagaaaaaatttaatgttgtc 123
Query: 117 aaagatatatactgaatcgtggttgctaggtttgtattactagtttaggatgcatgtttt 176
||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||
Sbjct: 124 aaagatatatactgaatcgtggtagctaggtttgtattactagtttaggatgcaagtttt 183
Query: 177 tgatcttatgatgatcaattgcttgtgagttcctaggcaatgaaaacagaatatatactg 236
|||||||||||||||||||||||||||||||| | ||||||||||||||||||| ||||
Sbjct: 184 tgatcttatgatgatcaattgcttgtgagttctttggcaatgaaaacagaatat--actg 241
Query: 237 gtgatttttcccagtaaaattgtcgagaaaagggaattgcactaatagggaagacgcata 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 gtgatttttcccagtaaaattgtcgagaaaagggaattgcactaatagggaagacgcata 301
Query: 297 ggtaaacttgtatctaaatggtatatgtatnttccaggcaaaagggtagaaacctaatna 356
|||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| |
Sbjct: 302 ggtaaacttgtacctaaatggtatatgtattttccaggcaaaagggtagaaacctaatta 361
Query: 357 gaaactagcttgaactcagagctataaaagtatatggttccatcaggtcatctagcagct 416
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 362 gaaactagcttgaactcagagctataaaagtatatggttccatcaggtcatcttgcagct 421
Query: 417 tcaatcactcactca 431
|||||||||||||||
Sbjct: 422 tcaatcactcactca 436
>RF00640;MIR167_1;AARH01012195.1/26948-26514 3694:Populus
trichocarpa
Length = 435
Score = 105 bits (53), Expect = 5e-22
Identities = 100/116 (86%), Gaps = 4/116 (3%)
Strand = Plus / Plus
Query: 316 ggtatatgtatnttccaggcaaaagggtagaaacctaatnagaa----actagcttgaac 371
|||||| |||| ||||||| ||||||||||||| |||| |||| ||||||||||||
Sbjct: 316 ggtatacgtattttccaggaaaaagggtagaaaaataattagaattaaactagcttgaac 375
Query: 372 tcagagctataaaagtatatggttccatcaggtcatctagcagcttcaatcactca 427
| ||| || || || ||||||||||||||||||||||| |||||||||||||||||
Sbjct: 376 ttagacctgtataaatatatggttccatcaggtcatcttgcagcttcaatcactca 431
Score = 99.6 bits (50), Expect = 3e-20
Identities = 73/80 (91%), Gaps = 3/80 (3%)
Strand = Plus / Plus
Query: 1 tttgagaggttgaagctgccagcatgatctggtaatgaacgtgttactctcatttatata 60
|||||||||||||||||||||||||||||||||||||||| | |||||| |||||| |
Sbjct: 4 tttgagaggttgaagctgccagcatgatctggtaatgaacctattactc---tttataca 60
Query: 61 tatattaacattaatcttat 80
||||| ||||||||||||||
Sbjct: 61 tatatcaacattaatcttat 80
>RF00640;MIR167_1;AASG02013372.1/3243-2901 3988:Ricinus communis
(castor bean)
Length = 343
Score = 71.9 bits (36), Expect = 7e-12
Identities = 39/40 (97%)
Strand = Plus / Plus
Query: 1 tttgagaggttgaagctgccagcatgatctggtaatgaac 40
|||||||| |||||||||||||||||||||||||||||||
Sbjct: 4 tttgagagattgaagctgccagcatgatctggtaatgaac 43
Score = 54.0 bits (27), Expect = 2e-06
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 393 gttccatcaggtcatctagcagcttcaatcactca 427
||||||||||||||||| |||||||||||| ||||
Sbjct: 305 gttccatcaggtcatcttgcagcttcaatccctca 339
>RF00640;MIR167_1;BABK01002345.1/2496-2649 34305:Lotus japonicus
Length = 154
Score = 71.9 bits (36), Expect = 7e-12
Identities = 36/36 (100%)
Strand = Plus / Plus
Query: 1 tttgagaggttgaagctgccagcatgatctggtaat 36
||||||||||||||||||||||||||||||||||||
Sbjct: 4 tttgagaggttgaagctgccagcatgatctggtaat 39
Score = 65.9 bits (33), Expect = 5e-10
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 391 tggttccatcaggtcatctagcagcttcaatcactca 427
||||||||||||||||||| |||||||||||||||||
Sbjct: 114 tggttccatcaggtcatcttgcagcttcaatcactca 150
>RF00640;MIR167_1;CAAP02000801.1/49293-49646 29760:Vitis vinifera
Length = 354
Score = 65.9 bits (33), Expect = 5e-10
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 1 tttgagaggttgaagctgccagcatgatctggt 33
|||||||||||||||||||||||||||||||||
Sbjct: 4 tttgagaggttgaagctgccagcatgatctggt 36
Score = 60.0 bits (30), Expect = 3e-08
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 398 atcaggtcatctagcagcttcaatcactcactca 431
|||||||||||| |||||||||||||||||||||
Sbjct: 321 atcaggtcatcttgcagcttcaatcactcactca 354
>RF00640;MIR167_1;ABXC01006864.1/41201-41318 4558:Sorghum bicolor
(sorghum)
Length = 118
Score = 61.9 bits (31), Expect = 7e-09
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 3 tgagaggttgaagctgccagcatgatctggt 33
|||||||||||||||||||||||||||||||
Sbjct: 6 tgagaggttgaagctgccagcatgatctggt 36
>RF00640;MIR167_1;ABXC01002438.1/140052-139788 4558:Sorghum
bicolor (sorghum)
Length = 265
Score = 58.0 bits (29), Expect = 1e-07
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 3 tgagaggttgaagctgccagcatgatctg 31
|||||||||||||||||||||||||||||
Sbjct: 6 tgagaggttgaagctgccagcatgatctg 34
>RF00640;MIR167_1;AAAA02020690.1/41483-41278 39946:Oryza sativa
Indica Group
Length = 206
Score = 54.0 bits (27), Expect = 2e-06
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 3 tgagaggttgaagctgccagcatgatctggt 33
||||||| |||||||||||||||||||||||
Sbjct: 6 tgagaggctgaagctgccagcatgatctggt 36
>RF00640;MIR167_1;EU549029.1/122-486 3702:Arabidopsis thaliana
(thale cress)
Length = 365
Score = 52.0 bits (26), Expect = 7e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 11 tgaagctgccagcatgatctggtaat 36
||||||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctggtaat 39
>RF00640;MIR167_1;EU549031.1/122-508 3702:Arabidopsis thaliana
(thale cress)
Length = 387
Score = 52.0 bits (26), Expect = 7e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 11 tgaagctgccagcatgatctggtaat 36
||||||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctggtaat 39
>RF00640;MIR167_1;EU549010.1/122-488 3702:Arabidopsis thaliana
(thale cress)
Length = 367
Score = 52.0 bits (26), Expect = 7e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 11 tgaagctgccagcatgatctggtaat 36
||||||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctggtaat 39
>RF00640;MIR167_1;EU952646.1/178-293 4577:Zea mays
Length = 116
Score = 52.0 bits (26), Expect = 7e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 3 tgagaggttgaagctgccagcatgatctgg 32
|||||| |||||||||||||||||||||||
Sbjct: 6 tgagagcttgaagctgccagcatgatctgg 35
>RF00640;MIR167_1;AASG02001065.1/6152-6064 3988:Ricinus communis
(castor bean)
Length = 89
Score = 48.1 bits (24), Expect = 1e-04
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 9 gttgaagctgccagcatgatctgg 32
||||||||||||||||||||||||
Sbjct: 12 gttgaagctgccagcatgatctgg 35
>RF00640;MIR167_1;BT062276.1/99-327 4577:Zea mays
Length = 229
Score = 48.1 bits (24), Expect = 1e-04
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 11 tgaagctgccagcatgatctggtaatga 38
||||||||||||||||||||||| ||||
Sbjct: 14 tgaagctgccagcatgatctggttatga 41
>RF00640;MIR167_1;ABIM01018604.1/478-580 3649:Carica papaya
(papaya)
Length = 103
Score = 46.1 bits (23), Expect = 4e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 gttgaagctgccagcatgatctg 31
|||||||||||||||||||||||
Sbjct: 12 gttgaagctgccagcatgatctg 34
>RF00640;MIR167_1;AARH01008931.1/3492-3395 3694:Populus
trichocarpa
Length = 98
Score = 46.1 bits (23), Expect = 4e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 gttgaagctgccagcatgatctg 31
|||||||||||||||||||||||
Sbjct: 12 gttgaagctgccagcatgatctg 34
>RF00640;MIR167_1;EU944277.1/110-337 4577:Zea mays
Length = 228
Score = 46.1 bits (23), Expect = 4e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 tgaagctgccagcatgatctggt 33
|||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctggt 36
>RF00640;MIR167_1;AACV01003428.1/8526-8249 39947:Oryza sativa
Japonica Group
Length = 278
Score = 46.1 bits (23), Expect = 4e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 tgaagctgccagcatgatctggt 33
|||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctggt 36
