miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00638;MIR159;AARH01005879.1/28103-28306 3694:Populus trichocarpa
Length = 204
Score = 357 bits (180), Expect = 4e-98
Identities = 199/204 (97%), Gaps = 1/204 (0%)
Strand = Plus / Plus
Query: 1 aatggtgggagagagcttccttcagcccactcatggataggagaaagggattgaattagc 60
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 1 aatggtgggagagagcttccttcagcccactcatggataggagaaaggggttgaattagc 60
Query: 61 tgccgactcattcattcaagcactagtagaaaaaagtggaatggatattcttttgctact 120
||||||||||||||||||||||| |||||||||| | |||||||||||||||||||||||
Sbjct: 61 tgccgactcattcattcaagcaccagtagaaaaagg-ggaatggatattcttttgctact 119
Query: 121 gtgattgtgtgaatgatgcgggagatagttttacatcccctctttttctgtgcttggact 180
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 120 gtgattgtgtgaatgatgcgggagataattttacatcccctctttttctgtgcttggact 179
Query: 181 gaagggagctccttccttctattg 204
||||||||||||||||||||||||
Sbjct: 180 gaagggagctccttccttctattg 203
>RF00638;MIR159;AARH01009765.1/191097-190892 3694:Populus
trichocarpa
Length = 206
Score = 256 bits (129), Expect = 1e-67
Identities = 181/197 (91%), Gaps = 1/197 (0%)
Strand = Plus / Plus
Query: 5 gtgggagagagcttccttcagcccactcatggataggagaaagggattgaattagctgcc 64
||||||||||||||| |||||||||||| ||||||||| |||||| ||||| ||||||||
Sbjct: 5 gtgggagagagcttctttcagcccactcgtggataggacaaaggggttgaactagctgcc 64
Query: 65 gactcattcattcaagcactagtagaaaaaagtg-gaatggatattcttttgctactgtg 123
||||||||||||||||||||||||||||||| | ||| || ||||||||||||||||
Sbjct: 65 gactcattcattcaagcactagtagaaaaaaaggcgaacggtgtttcttttgctactgtg 124
Query: 124 attgtgtgaatgatgcgggagatagttttacatcccctctttttctgtgcttggactgaa 183
|||||||||||||||||||||||| |||| ||||| ||| ||||||||||||||||||||
Sbjct: 125 attgtgtgaatgatgcgggagataattttccatcctctccttttctgtgcttggactgaa 184
Query: 184 gggagctccttccttct 200
|||||||||||||||||
Sbjct: 185 gggagctccttccttct 201
>RF00638;MIR159;AASG02000468.1/24439-24641 3988:Ricinus communis
(castor bean)
Length = 203
Score = 184 bits (93), Expect = 3e-46
Identities = 179/203 (88%), Gaps = 6/203 (2%)
Strand = Plus / Plus
Query: 1 aatggtgggagagagcttccttcagcccactcatggataggag-aaagggattgaattag 59
||||||| |||||||||||||||||||||||||||||| || | |||||| |||| ||
Sbjct: 1 aatggtgtgagagagcttccttcagcccactcatggatgggggtaaaggggctgaagtat 60
Query: 60 ctgccgactcattcattcaagcactagtagaaaaaagtggaatggatattctttt-gcta 118
||||||||||||||||||||||||||||||| ||| || || | || | |||| ||||
Sbjct: 61 ctgccgactcattcattcaagcactagtagacaaa---gggattggtactgttttagcta 117
Query: 119 ctgtgattgtgtgaatgatgcgggagatagttttacatcccctctttttctgtgcttgga 178
|||||||||| |||||||||||||||||| |||| |||||| |||||||| |||||||||
Sbjct: 118 ctgtgattgtatgaatgatgcgggagataattttgcatccc-tctttttccgtgcttgga 176
Query: 179 ctgaagggagctccttccttcta 201
||||||||||||||||| |||||
Sbjct: 177 ctgaagggagctccttctttcta 199
>RF00638;MIR159;ABIM01005798.1/7517-7326 3649:Carica papaya (papaya)
Length = 192
Score = 93.7 bits (47), Expect = 9e-19
Identities = 66/71 (92%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 130 tgaatgatgcgggagatagttttacatcccctctttttctgtgcttggactgaagggagc 189
|||||||||||||||||| |||||||||| ||||| |||||||||||||||||||||||
Sbjct: 118 tgaatgatgcgggagatatttttacatcca-tctttctctgtgcttggactgaagggagc 176
Query: 190 tccttccttct 200
|||||| ||||
Sbjct: 177 tccttctttct 187
Score = 79.8 bits (40), Expect = 1e-14
Identities = 65/72 (90%), Gaps = 1/72 (1%)
Strand = Plus / Plus
Query: 8 ggagagagcttccttcagcccactcatggatagg-agaaagggattgaattagctgccga 66
||||||||||||||||||||||||||||||| || | ||||| | ||| ||||||||||
Sbjct: 8 ggagagagcttccttcagcccactcatggatgggtatgaaggggtagaagtagctgccga 67
Query: 67 ctcattcattca 78
||||||||||||
Sbjct: 68 ctcattcattca 79
>RF00638;MIR159;ABIM01001344.1/11584-11387 3649:Carica papaya
(papaya)
Length = 198
Score = 81.8 bits (41), Expect = 3e-15
Identities = 150/181 (82%), Gaps = 9/181 (4%)
Strand = Plus / Plus
Query: 13 gagcttccttcagcccactcatggataggaga-aagggattgaattagctgccgactcat 71
||||||||| ||| |||||||||||| ||| ||||| ||| |||||||||||||||||
Sbjct: 13 gagcttcctccagtccactcatggat--gagttaagggtttggattagctgccgactcat 70
Query: 72 tcattcaagcactagtagaaaaaagtggaatggatattcttttgctactgtgattgtgtg 131
||||||| ||| |||||||| | ||| |||| ||||| || |||||| ||||||
Sbjct: 71 tcattcagacac-agtagaaattaagggaccggat---cttttactgctgtgaatgtgtg 126
Query: 132 aatgatgcgggagatagttttacatcccctctttttctgtgcttggactgaagggagctc 191
|||||||||||||||| ||| |||| || || |||||||||||||||||||||||||
Sbjct: 127 aatgatgcgggagataattt--catcttcttcttgtctgtgcttggactgaagggagctc 184
Query: 192 c 192
|
Sbjct: 185 c 185
>RF00638;MIR159;CU570967.5/92301-92498 3880:Medicago truncatula
(barrel medic)
Length = 198
Score = 75.8 bits (38), Expect = 2e-13
Identities = 63/70 (90%), Gaps = 1/70 (1%)
Strand = Plus / Plus
Query: 10 agagagcttccttcagcccactcatggataggagaaagggattgaattagctgccgactc 69
|||||||| |||||| |||||||||||||||| ||||| ||||||||||||| |||||
Sbjct: 10 agagagctctcttcagtccactcatggatagga-aaaggttttgaattagctgctgactc 68
Query: 70 attcattcaa 79
||||||||||
Sbjct: 69 attcattcaa 78
Score = 44.1 bits (22), Expect = 8e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 171 tgcttggactgaagggagctcc 192
||||||||||||||||||||||
Sbjct: 164 tgcttggactgaagggagctcc 185
>RF00638;MIR159;AM471650.2/47253-47061 29760:Vitis vinifera
Length = 193
Score = 71.9 bits (36), Expect = 3e-12
Identities = 151/184 (82%), Gaps = 14/184 (7%)
Strand = Plus / Plus
Query: 10 agagagcttccttcagcccactcatggataggagaaagggattgaattagctgccgactc 69
|||||||||||||||| |||||||||||| || | ||| ||| |||||||||||||||
Sbjct: 10 agagagcttccttcagtccactcatggatgggttag-gggtttggattagctgccgactc 68
Query: 70 attcattcaagcactagtagaaaaaagtggaa-tggatattcttttgctactgtgattgt 128
|||||||||| ||| ||||||| ||||| |||| ||| ||||||||| |||
Sbjct: 69 attcattcaaacac-agtagaa-----tggaaatggag-----tttactactgtgaatgt 117
Query: 129 gtgaatgatgcgggagatagttttacatcccctctttttctgtgcttggactgaagggag 188
|||||||||||||||| || ||| ||||| | || ||||||||||||||||||||||
Sbjct: 118 gtgaatgatgcgggaggtaaattt-catccttttcttgtctgtgcttggactgaagggag 176
Query: 189 ctcc 192
||||
Sbjct: 177 ctcc 180
>RF00638;MIR159;EU549334.1/124-324 3702:Arabidopsis thaliana (thale
cress)
Length = 201
Score = 69.9 bits (35), Expect = 1e-11
Identities = 67/75 (89%), Gaps = 2/75 (2%)
Strand = Plus / Plus
Query: 121 gtgattgtgtgaatgatgcgggagatagttttacatcccctctttttctgtgcttggact 180
|||| |||||||||||||||||||||| |||| |||| ||||| |||||| |||||||
Sbjct: 119 gtgactgtgtgaatgatgcgggagatatttttg-atcct-tctttatctgtgtttggact 176
Query: 181 gaagggagctccttc 195
|||||||||||||||
Sbjct: 177 gaagggagctccttc 191
>RF00638;MIR159;AY884227.1/8-182 3694:Populus trichocarpa
Length = 175
Score = 69.9 bits (35), Expect = 1e-11
Identities = 60/67 (89%), Gaps = 1/67 (1%)
Strand = Plus / Plus
Query: 13 gagcttccttcagcccactcatggataggagaaagggattgaattagctgccgactcatt 72
||||||||||||| ||||||||||| || ||| ||| ||| ||||||||||||||||||
Sbjct: 1 gagcttccttcagtccactcatggacgggcgaa-gggtttggattagctgccgactcatt 59
Query: 73 cattcaa 79
|||||||
Sbjct: 60 cattcaa 66
Score = 54.0 bits (27), Expect = 8e-07
Identities = 67/79 (84%), Gaps = 1/79 (1%)
Strand = Plus / Plus
Query: 114 tgctactgtgattgtgtgaatgatgcgggagatagttttacatcccctctttttctgtgc 173
||||| ||||| ||||||||||| ||||||||| ||| ||||| | || |||||||
Sbjct: 94 tgctattgtgaatgtgtgaatgacgcgggagattaattt-catccttttcttctctgtgc 152
Query: 174 ttggactgaagggagctcc 192
|||||||||||||||||||
Sbjct: 153 ttggactgaagggagctcc 171
>RF00638;MIR159;EF203471.1/100-300 3712:Brassica oleracea
Length = 201
Score = 67.9 bits (34), Expect = 5e-11
Identities = 64/70 (91%), Gaps = 3/70 (4%)
Strand = Plus / Plus
Query: 126 tgtgtgaatgatgcgggagatagttttacatcccctctttttctgtgcttggactgaagg 185
||||||||||||||||||||| ||||| |||| | ||||| |||||| ||||||||||||
Sbjct: 125 tgtgtgaatgatgcgggagat-gtttt-catctc-tctttatctgtgtttggactgaagg 181
Query: 186 gagctccttc 195
||||||||||
Sbjct: 182 gagctccttc 191
>RF00638;MIR159;CU459032.2/137942-137752 3880:Medicago truncatula
(barrel medic)
Length = 191
Score = 60.0 bits (30), Expect = 1e-08
Identities = 61/70 (87%), Gaps = 1/70 (1%)
Strand = Plus / Plus
Query: 10 agagagcttccttcagcccactcatggataggagaaagggattgaattagctgccgactc 69
|||||||||||||||| ||||||||||| ||| || ||| |||||||| |||| |||||
Sbjct: 10 agagagcttccttcagtccactcatgga-agggtaaggggtttgaattacctgctgactc 68
Query: 70 attcattcaa 79
||| ||||||
Sbjct: 69 attgattcaa 78
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 166 ttctgtgcttggactgaagggagctcc 192
|||| ||||||||||||||||||||||
Sbjct: 152 ttctttgcttggactgaagggagctcc 178
>RF00638;MIR159;AASG02011104.1/6116-5917 3988:Ricinus communis
(castor bean)
Length = 200
Score = 56.0 bits (28), Expect = 2e-07
Identities = 70/80 (87%), Gaps = 3/80 (3%)
Strand = Plus / Plus
Query: 114 tgctactgtgattgtgtgaatgatgcgggagatagttttacat-cccctctttttctgtg 172
||||| ||||| |||||||||||||||||||||| ||| ||| | ||| || ||||||
Sbjct: 110 tgctattgtgaatgtgtgaatgatgcgggagataaattt-catacttctc-ttctctgtg 167
Query: 173 cttggactgaagggagctcc 192
||||||||||||||||||||
Sbjct: 168 cttggactgaagggagctcc 187
Score = 50.1 bits (25), Expect = 1e-05
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 51 ttgaattagctgccgactcattcattcaa 79
|||||||| ||||||||||||||||||||
Sbjct: 50 ttgaattatctgccgactcattcattcaa 78
>RF00638;MIR159;AY728409.1/1-184 3694:Populus trichocarpa
Length = 184
Score = 54.0 bits (27), Expect = 8e-07
Identities = 57/66 (86%), Gaps = 2/66 (3%)
Strand = Plus / Plus
Query: 10 agagagcttccttcagcccactcatggataggagaaagggattgaattagctgccgactc 69
||||||||| |||||| |||||||||| | | || | ||||| ||||||||||||||||
Sbjct: 9 agagagctttcttcagtccactcatgggtggtagta--ggatttaattagctgccgactc 66
Query: 70 attcat 75
||||||
Sbjct: 67 attcat 72
>RF00638;MIR159;BABK01063850.1/1-151 34305:Lotus japonicus
Length = 151
Score = 50.1 bits (25), Expect = 1e-05
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 51 ttgaattagctgccgactcattcattcaa 79
||||||||||||| |||||||||||||||
Sbjct: 30 ttgaattagctgctgactcattcattcaa 58
>RF00638;MIR159;AM458581.1/27231-27413 29760:Vitis vinifera
Length = 183
Score = 50.1 bits (25), Expect = 1e-05
Identities = 52/60 (86%), Gaps = 2/60 (3%)
Strand = Plus / Plus
Query: 10 agagagcttccttcagcccactcatggataggagaaagggattgaattagctgccgactc 69
||||||||| |||||| |||||||||| | | || | ||||||||||||||||||||||
Sbjct: 10 agagagctttcttcagtccactcatgggtggcagta--ggattgaattagctgccgactc 67
Score = 50.1 bits (25), Expect = 1e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 168 ctgtgcttggactgaagggagctcc 192
|||||||||||||||||||||||||
Sbjct: 146 ctgtgcttggactgaagggagctcc 170
>RF00638;MIR159;AASG02019405.1/2563-2341 3988:Ricinus communis
(castor bean)
Length = 223
Score = 48.1 bits (24), Expect = 5e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 48 ggattgaattagctgccgactcattcat 75
||||| ||||||||||||||||||||||
Sbjct: 46 ggatttaattagctgccgactcattcat 73
>RF00638;MIR159;AP006665.1/46415-46593 34305:Lotus japonicus
Length = 179
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 174 ttggactgaagggagctccttccttct 200
|||||||||||||||||||||| ||||
Sbjct: 148 ttggactgaagggagctccttctttct 174
>RF00638;MIR159;ABIM01013664.1/2939-3169 3649:Carica papaya (papaya)
Length = 231
Score = 44.1 bits (22), Expect = 8e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 173 cttggactgaagggagctccttcctt 198
|||||||||||||||||||| |||||
Sbjct: 199 cttggactgaagggagctccctcctt 224
>RF00638;MIR159;EU549299.1/339-148 3702:Arabidopsis thaliana (thale
cress)
Length = 192
Score = 44.1 bits (22), Expect = 8e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 171 tgcttggactgaagggagctcc 192
||||||||||||||||||||||
Sbjct: 158 tgcttggactgaagggagctcc 179
>RF00638;MIR159;AASG02006722.1/5300-5498 3988:Ricinus communis
(castor bean)
Length = 199
Score = 44.1 bits (22), Expect = 8e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 174 ttggactgaagggagctccttc 195
||||||||||||||||||||||
Sbjct: 168 ttggactgaagggagctccttc 189
>RF00638;MIR159;BABK01011373.1/1521-1344 34305:Lotus japonicus
Length = 178
Score = 44.1 bits (22), Expect = 8e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 54 aattagctgccgactcattcat 75
||||||||||||||||||||||
Sbjct: 52 aattagctgccgactcattcat 73
>RF00638;MIR159;EU946960.1/247-441 4577:Zea mays
Length = 195
Score = 44.1 bits (22), Expect = 8e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 53 gaattagctgccgactcattca 74
||||||||||||||||||||||
Sbjct: 51 gaattagctgccgactcattca 72
>RF00638;MIR159;ABXC01001681.1/23904-24102 4558:Sorghum bicolor
(sorghum)
Length = 199
Score = 44.1 bits (22), Expect = 8e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 53 gaattagctgccgactcattca 74
||||||||||||||||||||||
Sbjct: 51 gaattagctgccgactcattca 72
>RF00638;MIR159;AACV01000479.1/66279-66476 39947:Oryza sativa
Japonica Group
Length = 198
Score = 44.1 bits (22), Expect = 8e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 53 gaattagctgccgactcattca 74
||||||||||||||||||||||
Sbjct: 51 gaattagctgccgactcattca 72
