miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00842;MIR403;EU549672.1/167-284 3702:Arabidopsis thaliana (thale
cress)
Length = 118
Score = 234 bits (118), Expect = 2e-61
Identities = 118/118 (100%)
Strand = Plus / Plus
Query: 16 tcgtattacatgttttgtgcttgaatctaattcaacaggctttatgtaagagattcttta 75
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tcgtattacatgttttgtgcttgaatctaattcaacaggctttatgtaagagattcttta 60
Query: 76 acaattcctataatctttgttgttggattagattcacgcacaaactcgtaatctgtct 133
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 acaattcctataatctttgttgttggattagattcacgcacaaactcgtaatctgtct 118
>RF00842;MIR403;AC189416.2/88220-88122 51351:Brassica rapa subsp.
pekinensis
Length = 99
Score = 83.8 bits (42), Expect = 6e-16
Identities = 42/42 (100%)
Strand = Plus / Plus
Query: 92 ttgttgttggattagattcacgcacaaactcgtaatctgtct 133
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58 ttgttgttggattagattcacgcacaaactcgtaatctgtct 99
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 19 tattacatgttttgtgcttgaatctaattc 48
||||||||||||||||| ||||||||||||
Sbjct: 4 tattacatgttttgtgcgtgaatctaattc 33
>RF00842;MIR403;AARH01001226.1/54332-54202 3694:Populus trichocarpa
Length = 131
Score = 63.9 bits (32), Expect = 5e-10
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 102 attagattcacgcacaaactcgtaatctgtct 133
||||||||||||||||||||||||||||||||
Sbjct: 100 attagattcacgcacaaactcgtaatctgtct 131
>RF00842;MIR403;CAAP02000653.1/14609-14502 29760:Vitis vinifera
Length = 108
Score = 61.9 bits (31), Expect = 2e-09
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 103 ttagattcacgcacaaactcgtaatctgtct 133
|||||||||||||||||||||||||||||||
Sbjct: 78 ttagattcacgcacaaactcgtaatctgtct 108
>RF00842;MIR403;ABIM01005602.1/13538-13393 3649:Carica papaya
(papaya)
Length = 146
Score = 60.0 bits (30), Expect = 8e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 104 tagattcacgcacaaactcgtaatctgtct 133
||||||||||||||||||||||||||||||
Sbjct: 117 tagattcacgcacaaactcgtaatctgtct 146
>RF00842;MIR403;AASG02004953.1/3036-2929 3988:Ricinus communis
(castor bean)
Length = 108
Score = 54.0 bits (27), Expect = 5e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 103 ttagattcacgcacaaactcgtaatctgtct 133
|||||||||||||||||||||| ||||||||
Sbjct: 78 ttagattcacgcacaaactcgtgatctgtct 108
>RF00842;MIR403;AARH01004350.1/142675-142577 3694:Populus
trichocarpa
Length = 99
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 103 ttagattcacgcacaaactcgtaatctgtct 133
||||||||||||||||||||| ||||||||
Sbjct: 69 ttagattcacgcacaaactcgcgatctgtct 99
>RF00842;MIR403;AASG02008767.1/6368-6472 3988:Ricinus communis
(castor bean)
Length = 105
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 103 ttagattcacgcacaaactcgtaatct 129
|||||||||||||||||||||| ||||
Sbjct: 75 ttagattcacgcacaaactcgtgatct 101
>RF00842;MIR403;CAAP02000014.1/37272-37187 29760:Vitis vinifera
Length = 86
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 103 ttagattcacgcacaaactcgtaatctgtct 133
||||||||||||||||||||| ||||||||
Sbjct: 56 ttagattcacgcacaaactcgggatctgtct 86
>RF00842;MIR403;CAAP02002017.1/13776-13691 29760:Vitis vinifera
Length = 86
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 103 ttagattcacgcacaaactcgtaatctgtct 133
||||||||||||||||||||| ||||||||
Sbjct: 56 ttagattcacgcacaaactcgggatctgtct 86
>RF00842;MIR403;AM431810.2/2208-2094 29760:Vitis vinifera
Length = 115
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 103 ttagattcacgcacaaactcgt 124
||||||||||||||||||||||
Sbjct: 85 ttagattcacgcacaaactcgt 106
