miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00714;MIR535;ABEU01004601.1/20377-20277 145481:Physcomitrella
patens subsp. patens
Length = 101
Score = 161 bits (81), Expect = 2e-39
Identities = 81/81 (100%)
Strand = Plus / Plus
Query: 1 gtgacaacgagagagagcacgctggaatgcactcttgtaagaagcatgggtatgttcttg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10 gtgacaacgagagagagcacgctggaatgcactcttgtaagaagcatgggtatgttcttg 69
Query: 61 tgtgccctctcccgctgtcgc 81
|||||||||||||||||||||
Sbjct: 70 tgtgccctctcccgctgtcgc 90
>RF00714;MIR535;ABEU01006897.1/4394-4494 145481:Physcomitrella
patens subsp. patens
Length = 101
Score = 65.9 bits (33), Expect = 7e-11
Identities = 69/81 (85%)
Strand = Plus / Plus
Query: 1 gtgacaacgagagagagcacgctggaatgcactcttgtaagaagcatgggtatgttcttg 60
|||||||||||||||||||||||||||||| || | || |||| ||| | ||||||||
Sbjct: 10 gtgacaacgagagagagcacgctggaatgctttcacgcaataagcctggatgtgttcttg 69
Query: 61 tgtgccctctcccgctgtcgc 81
||||||| ||||| ||||||
Sbjct: 70 cgtgccctttcccgttgtcgc 90
>RF00714;MIR535;ABEU01009956.1/139970-139869 145481:Physcomitrella
patens subsp. patens
Length = 102
Score = 60.0 bits (30), Expect = 4e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 1 gtgacaacgagagagagcacgctggaatgc 30
||||||||||||||||||||||||||||||
Sbjct: 10 gtgacaacgagagagagcacgctggaatgc 39
>RF00714;MIR535;ABEU01003761.1/27167-27269 145481:Physcomitrella
patens subsp. patens
Length = 103
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 1 gtgacaacgagagagagcacgctggaatgc 30
|||||||||||||||||||||| |||||||
Sbjct: 10 gtgacaacgagagagagcacgccggaatgc 39
>RF00714;MIR535;ABIM01002931.1/4831-4931 3649:Carica papaya
(papaya)
Length = 101
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 gtgacaacgagagagagcacgct 23
|||||||||||||||||||||||
Sbjct: 10 gtgacaacgagagagagcacgct 32
>RF00714;MIR535;AASG02028037.1/959-864 3988:Ricinus communis
(castor bean)
Length = 96
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 2 tgacaacgagagagagcacgct 23
||||||||||||||||||||||
Sbjct: 11 tgacaacgagagagagcacgct 32
>RF00714;MIR535;AAAA02031914.1/1343-1245 39946:Oryza sativa Indica
Group
Length = 99
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 gtgacaacgagagagagcacgc 22
||||||||||||||||||||||
Sbjct: 3 gtgacaacgagagagagcacgc 24
