miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00638;MIR159;AARH01017144.1/4716-4901 3694:Populus trichocarpa
          Length = 186

 Score =  355 bits (179), Expect = 1e-97
 Identities = 182/183 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gattagggagtggagctccttgaagtccaatagaggttcttgctgggtagattaagctgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   gattagggagtggagctccttgaagtccaatagaggttcttgctgggtagattaagctgc 60

                                                                       
Query: 61  taagctatggatccacagtcctatctatcaactgaaggataggtttgcggcttgcatatc 120
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 61  taagctatggatccacagtcctatctatcaaccgaaggataggtttgcggcttgcatatc 120

                                                                       
Query: 121 tcaggagctttattgcctaatgttagatccctttttggattgaagggagctctaaaccca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tcaggagctttattgcctaatgttagatccctttttggattgaagggagctctaaaccca 180

              
Query: 181 taa 183
           |||
Sbjct: 181 taa 183




>RF00638;MIR159;AY728395.1/6-170 3694:Populus trichocarpa
          Length = 165

 Score =  111 bits (56), Expect = 3e-24
 Identities = 65/68 (95%)
 Strand = Plus / Plus

                                                                       
Query: 106 tgcggcttgcatatctcaggagctttattgcctaatgttagatccctttttggattgaag 165
           ||||||||||||||||||||||||||||| ||||||||||||||  ||||||||||||||
Sbjct: 98  tgcggcttgcatatctcaggagctttattacctaatgttagatctttttttggattgaag 157

                   
Query: 166 ggagctct 173
           ||||||||
Sbjct: 158 ggagctct 165




>RF00638;MIR159;AASG02012489.1/1166-1359 3988:Ricinus communis
           (castor bean)
          Length = 194

 Score =  105 bits (53), Expect = 2e-22
 Identities = 147/176 (83%), Gaps = 8/176 (4%)
 Strand = Plus / Plus

                                                                       
Query: 7   ggagtggagctccttgaagtccaatagaggttcttgctgggtagattaagctgctaagct 66
           |||||||||||||||||||||||||||||| ||||| |||||||||| ||||||| ||||
Sbjct: 7   ggagtggagctccttgaagtccaatagaggatcttgatgggtagattgagctgctgagct 66

                                                                       
Query: 67  atggat-ccacagtcctat------ctatca-actgaaggataggtttgcggcttgcata 118
           |||||| |||||| |||||        || | | |   ||||||| ||| ||||||||||
Sbjct: 67  atggatcccacagccctataagcagagattataattttggataggcttgtggcttgcata 126

                                                                   
Query: 119 tctcaggagctttattgcctaatgttagatccctttttggattgaagggagctcta 174
           |||||||||||| ||| |||  | |||||||| | |||||||||||||||||||||
Sbjct: 127 tctcaggagcttcattaccttgtattagatccttgtttggattgaagggagctcta 182




>RF00638;MIR159;CAAP02007000.1/8870-9063 29760:Vitis vinifera
          Length = 194

 Score = 87.7 bits (44), Expect = 5e-17
 Identities = 62/68 (91%)
 Strand = Plus / Plus

                                                                      
Query: 7  ggagtggagctccttgaagtccaatagaggttcttgctgggtagattaagctgctaagct 66
          |||||||||||||||||||||||||||||| |||| ||||||||||| ||||||| |  |
Sbjct: 7  ggagtggagctccttgaagtccaatagagggtcttactgggtagattgagctgctgactt 66

                  
Query: 67 atggatcc 74
          ||||||||
Sbjct: 67 atggatcc 74




>RF00638;MIR159;ABIM01001657.1/35314-35507 3649:Carica papaya
          (papaya)
          Length = 194

 Score = 63.9 bits (32), Expect = 7e-10
 Identities = 53/60 (88%)
 Strand = Plus / Plus

                                                                      
Query: 13 gagctccttgaagtccaatagaggttcttgctgggtagattaagctgctaagctatggat 72
          |||||||||||||||||||||||| | |||| |||| |||| ||||||  ||||||||||
Sbjct: 13 gagctccttgaagtccaatagaggattttgcagggttgattgagctgccgagctatggat 72



 Score = 48.1 bits (24), Expect = 4e-05
 Identities = 65/76 (85%), Gaps = 2/76 (2%)
 Strand = Plus / Plus

                                                                       
Query: 100 taggtttgcggcttgcatatctcaggagctttatt-gcctaatgttagatccctttttgg 158
           |||| |||||| ||||||||||||||||||  |||  |||||  ||| |||| | |||||
Sbjct: 108 taggcttgcggtttgcatatctcaggagctgcattaccctaagctta-atccttgtttgg 166

                           
Query: 159 attgaagggagctcta 174
           ||||||||||||||||
Sbjct: 167 attgaagggagctcta 182




>RF00638;MIR159;AC235792.1/25881-25682 4081:Solanum lycopersicum
          Length = 200

 Score = 56.0 bits (28), Expect = 2e-07
 Identities = 71/84 (84%), Gaps = 1/84 (1%)
 Strand = Plus / Plus

                                                                      
Query: 6  gggagtggagctccttgaagtccaatagaggttcttgctgggtagattaagctgctaagc 65
          ||||||||||||||||||||||||| ||| | |||  | || |||||| ||||||| | |
Sbjct: 6  gggagtggagctccttgaagtccaacagaagatctaacaggttagattgagctgctgacc 65

                                  
Query: 66 tatgga-tccacagtcctatctat 88
          |||||| ||| ||| |||||||||
Sbjct: 66 tatggattcctcagccctatctat 89



 Score = 46.1 bits (23), Expect = 2e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 152 tttttggattgaagggagctcta 174
           |||||||||||||||||||||||
Sbjct: 166 tttttggattgaagggagctcta 188