miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00247;mir-160;AARH01003540.1/65975-65890 3694:Populus
          trichocarpa
          Length = 86

 Score =  147 bits (74), Expect = 3e-35
 Identities = 83/86 (96%)
 Strand = Plus / Plus

                                                                      
Query: 8  atgtgcctggctccctgtatgccatttgcagagcccaccggttcttcgatggcctccgtg 67
          ||||||||||||||||||||||||||||||||||||| ||| || |||||||||||||||
Sbjct: 1  atgtgcctggctccctgtatgccatttgcagagcccaacggatcctcgatggcctccgtg 60

                                    
Query: 68 gatggcgtatgaggagccatgcatat 93
          ||||||||||||||||||||||||||
Sbjct: 61 gatggcgtatgaggagccatgcatat 86




>RF00247;mir-160;CAAP02000343.1/40092-40007 29760:Vitis vinifera
          Length = 86

 Score =  133 bits (67), Expect = 5e-31
 Identities = 79/83 (95%)
 Strand = Plus / Plus

                                                                      
Query: 11 tgcctggctccctgtatgccatttgcagagcccaccggttcttcgatggcctccgtggat 70
          ||||||||||||||||||||||||||||||||||||||  | |||||||||| |||||||
Sbjct: 4  tgcctggctccctgtatgccatttgcagagcccaccggcacatcgatggccttcgtggat 63

                                 
Query: 71 ggcgtatgaggagccatgcatat 93
          |||||||||||||||||||||||
Sbjct: 64 ggcgtatgaggagccatgcatat 86




>RF00247;mir-160;ABIM01012188.1/1387-1471 3649:Carica papaya
          (papaya)
          Length = 85

 Score =  119 bits (60), Expect = 7e-27
 Identities = 79/84 (94%), Gaps = 1/84 (1%)
 Strand = Plus / Plus

                                                                      
Query: 9  tgtgcctggctccctgtatgccatttgcagagcccaccggttcttcgatggcctccgtgg 68
          |||||||||||||||||||||||||||||||||||||| |  | ||| ||||||||||||
Sbjct: 2  tgtgcctggctccctgtatgccatttgcagagcccacc-gagcatcgctggcctccgtgg 60

                                  
Query: 69 atggcgtatgaggagccatgcata 92
          ||||||||||||||||||||||||
Sbjct: 61 atggcgtatgaggagccatgcata 84




>RF00247;mir-160;EU548617.1/275-359 3702:Arabidopsis thaliana
          (thale cress)
          Length = 85

 Score = 93.7 bits (47), Expect = 4e-19
 Identities = 75/83 (90%), Gaps = 1/83 (1%)
 Strand = Plus / Plus

                                                                      
Query: 11 tgcctggctccctgtatgccatttgcagagcccaccggttcttcgatggcctccgtggat 70
          |||||||||||||||||||||| ||| ||||||| ||  |  |||||| |||||||||||
Sbjct: 4  tgcctggctccctgtatgccatatgctgagcccatcgagt-atcgatgacctccgtggat 62

                                 
Query: 71 ggcgtatgaggagccatgcatat 93
          |||||||||||||||||||||||
Sbjct: 63 ggcgtatgaggagccatgcatat 85




>RF00247;mir-160;BABK01026793.1/1193-1108 34305:Lotus japonicus
          Length = 86

 Score = 67.9 bits (34), Expect = 2e-11
 Identities = 73/86 (84%)
 Strand = Plus / Plus

                                                                      
Query: 8  atgtgcctggctccctgtatgccatttgcagagcccaccggttcttcgatggcctccgtg 67
          |||||||||||||||||||||||||||| ||||| || ||   | || |||  |||  ||
Sbjct: 1  atgtgcctggctccctgtatgccatttggagagctcatcgaaacatcaatgatctctttg 60

                                    
Query: 68 gatggcgtatgaggagccatgcatat 93
          ||||||||||||||||||| ||||||
Sbjct: 61 gatggcgtatgaggagccaagcatat 86




>RF00247;mir-160;AC196190.2/61996-61908 4081:Solanum lycopersicum
          Length = 89

 Score = 58.0 bits (29), Expect = 2e-08
 Identities = 35/37 (94%)
 Strand = Plus / Plus

                                               
Query: 11 tgcctggctccctgtatgccatttgcagagcccaccg 47
          ||||||||||||||||||||||||||| ||| |||||
Sbjct: 4  tgcctggctccctgtatgccatttgcaaagctcaccg 40




>RF00247;mir-160;AC148995.2/105120-105205 3880:Medicago truncatula
          (barrel medic)
          Length = 86

 Score = 56.0 bits (28), Expect = 9e-08
 Identities = 31/32 (96%)
 Strand = Plus / Plus

                                          
Query: 9  tgtgcctggctccctgtatgccatttgcagag 40
          ||||||||||||||||||||||||||| ||||
Sbjct: 2  tgtgcctggctccctgtatgccatttgtagag 33




>RF00247;mir-160;CAAP02000723.1/67959-67874 29760:Vitis vinifera
          Length = 86

 Score = 56.0 bits (28), Expect = 9e-08
 Identities = 34/36 (94%)
 Strand = Plus / Plus

                                              
Query: 11 tgcctggctccctgtatgccatttgcagagcccacc 46
          ||||||||||||||||||||||||||| || |||||
Sbjct: 4  tgcctggctccctgtatgccatttgcaaagtccacc 39




>RF00247;mir-160;AASG02001090.1/34048-34133 3988:Ricinus communis
          (castor bean)
          Length = 86

 Score = 54.0 bits (27), Expect = 3e-07
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                     
Query: 9  tgtgcctggctccctgtatgccatttg 35
          |||||||||||||||||||||||||||
Sbjct: 2  tgtgcctggctccctgtatgccatttg 28




>RF00247;mir-160;AY728427.1/2-87 3694:Populus trichocarpa
          Length = 86

 Score = 50.1 bits (25), Expect = 5e-06
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                       
Query: 9  tgtgcctggctccctgtatgccatttgca 37
          |||||||||||||||| ||||||||||||
Sbjct: 2  tgtgcctggctccctgcatgccatttgca 30




>RF00247;mir-160;AC126015.41/7942-7857 3880:Medicago truncatula
          (barrel medic)
          Length = 86

 Score = 50.1 bits (25), Expect = 5e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 8  atgtgcctggctccctgtatgccat 32
          |||||||||||||||||||||||||
Sbjct: 1  atgtgcctggctccctgtatgccat 25



 Score = 50.1 bits (25), Expect = 5e-06
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                       
Query: 65 gtggatggcgtatgaggagccatgcatat 93
          |||||||||||||||||||||| ||||||
Sbjct: 58 gtggatggcgtatgaggagccaagcatat 86




>RF00247;mir-160;ABXC01004530.1/55208-55296 4558:Sorghum bicolor
          (sorghum)
          Length = 89

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 8  atgtgcctggctccctgtatgcca 31
          ||||||||||||||||||||||||
Sbjct: 1  atgtgcctggctccctgtatgcca 24




>RF00247;mir-160;EU798771.1/193-98 58934:Zizania latifolia
          Length = 96

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 8  atgtgcctggctccctgtatgcca 31
          ||||||||||||||||||||||||
Sbjct: 1  atgtgcctggctccctgtatgcca 24




>RF00247;mir-160;AAAA02022910.1/14752-14660 39946:Oryza sativa
          Indica Group
          Length = 93

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 8  atgtgcctggctccctgtatgcca 31
          ||||||||||||||||||||||||
Sbjct: 1  atgtgcctggctccctgtatgcca 24




>RF00247;mir-160;ABIM01017407.1/6156-6071 3649:Carica papaya
          (papaya)
          Length = 86

 Score = 46.1 bits (23), Expect = 8e-05
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 11 tgcctggctccctgtatgccatttgca 37
          |||||||||||||||||||||| ||||
Sbjct: 4  tgcctggctccctgtatgccatctgca 30




>RF00247;mir-160;CAAP02006197.1/486-575 29760:Vitis vinifera
          Length = 90

 Score = 46.1 bits (23), Expect = 8e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 9  tgtgcctggctccctgtatgcca 31
          |||||||||||||||||||||||
Sbjct: 2  tgtgcctggctccctgtatgcca 24




>RF00247;mir-160;FM878703.1/301-387 213592:Musa acuminata subsp.
          burmannicoides
          Length = 87

 Score = 46.1 bits (23), Expect = 8e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 9  tgtgcctggctccctgtatgcca 31
          |||||||||||||||||||||||
Sbjct: 2  tgtgcctggctccctgtatgcca 24




>RF00247;mir-160;EU975926.1/304-390 4577:Zea mays
          Length = 87

 Score = 46.1 bits (23), Expect = 8e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 9  tgtgcctggctccctgtatgcca 31
          |||||||||||||||||||||||
Sbjct: 2  tgtgcctggctccctgtatgcca 24




>RF00247;mir-160;ABXC01002436.1/220577-220488 4558:Sorghum bicolor
          (sorghum)
          Length = 90

 Score = 46.1 bits (23), Expect = 8e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 9  tgtgcctggctccctgtatgcca 31
          |||||||||||||||||||||||
Sbjct: 2  tgtgcctggctccctgtatgcca 24




>RF00247;mir-160;AAAA02005231.1/55127-55040 39946:Oryza sativa
          Indica Group
          Length = 88

 Score = 46.1 bits (23), Expect = 8e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 9  tgtgcctggctccctgtatgcca 31
          |||||||||||||||||||||||
Sbjct: 2  tgtgcctggctccctgtatgcca 24




>RF00247;mir-160;DQ455766.1/101-12 169985:Oenocarpus bataua
          Length = 90

 Score = 46.1 bits (23), Expect = 8e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 9  tgtgcctggctccctgtatgcca 31
          |||||||||||||||||||||||
Sbjct: 2  tgtgcctggctccctgtatgcca 24




>RF00247;mir-160;Z97344.2/54320-54406 3702:Arabidopsis thaliana
          (thale cress)
          Length = 87

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 10 gtgcctggctccctgtatgcca 31
          ||||||||||||||||||||||
Sbjct: 3  gtgcctggctccctgtatgcca 24




>RF00247;mir-160;EU974767.1/328-419 4577:Zea mays
          Length = 92

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 10 gtgcctggctccctgtatgcca 31
          ||||||||||||||||||||||
Sbjct: 3  gtgcctggctccctgtatgcca 24




>RF00247;mir-160;AAAA02020747.1/14884-14971 39946:Oryza sativa
          Indica Group
          Length = 88

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 10 gtgcctggctccctgtatgcca 31
          ||||||||||||||||||||||
Sbjct: 3  gtgcctggctccctgtatgcca 24




>RF00247;mir-160;ABEU01014597.1/43590-43504 145481:Physcomitrella
          patens subsp. patens
          Length = 87

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 11 tgcctggctccctgtatgccatttgc 36
          ||||||||||||||||||||| ||||
Sbjct: 4  tgcctggctccctgtatgccacttgc 29