miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00247;mir-160;AY728427.1/2-87 3694:Populus trichocarpa
Length = 86
Score = 170 bits (86), Expect = 2e-42
Identities = 86/86 (100%)
Strand = Plus / Plus
Query: 8 gtgtgcctggctccctgcatgccatttgcatagctcatcagaacgtcggtggccttggtg 67
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gtgtgcctggctccctgcatgccatttgcatagctcatcagaacgtcggtggccttggtg 60
Query: 68 gatggcgtgcaacgagtcatgcatgc 93
||||||||||||||||||||||||||
Sbjct: 61 gatggcgtgcaacgagtcatgcatgc 86
>RF00247;mir-160;CAAP02000343.1/40092-40007 29760:Vitis vinifera
Length = 86
Score = 58.0 bits (29), Expect = 2e-08
Identities = 56/65 (86%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgcatgccatttgcatagctcatcagaacgtcggtggccttggtggat 70
|||||||||||||| |||||||||||| ||| || | | || ||| ||||||| ||||||
Sbjct: 4 tgcctggctccctgtatgccatttgcagagcccaccggcacatcgatggccttcgtggat 63
Query: 71 ggcgt 75
|||||
Sbjct: 64 ggcgt 68
>RF00247;mir-160;ABIM01017407.1/6156-6071 3649:Carica papaya
(papaya)
Length = 86
Score = 54.0 bits (27), Expect = 3e-07
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 55 ggtggccttggtggatggcgtgcaacgagtcatgcatgc 93
||||||||||||||||||||||| | ||| |||||||||
Sbjct: 48 ggtggccttggtggatggcgtgcgaggagccatgcatgc 86
>RF00247;mir-160;AARH01003540.1/65975-65890 3694:Populus
trichocarpa
Length = 86
Score = 54.0 bits (27), Expect = 3e-07
Identities = 57/67 (85%)
Strand = Plus / Plus
Query: 9 tgtgcctggctccctgcatgccatttgcatagctcatcagaacgtcggtggccttggtgg 68
|||||||||||||||| |||||||||||| ||| || | || | ||| |||||| ||||
Sbjct: 2 tgtgcctggctccctgtatgccatttgcagagcccaacggatcctcgatggcctccgtgg 61
Query: 69 atggcgt 75
|||||||
Sbjct: 62 atggcgt 68
>RF00247;mir-160;BABK01026793.1/1193-1108 34305:Lotus japonicus
Length = 86
Score = 52.0 bits (26), Expect = 1e-06
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 9 tgtgcctggctccctgcatgccatttgcatagctcatc 46
|||||||||||||||| |||||||||| | ||||||||
Sbjct: 2 tgtgcctggctccctgtatgccatttggagagctcatc 39
>RF00247;mir-160;AC196190.2/61996-61908 4081:Solanum lycopersicum
Length = 89
Score = 52.0 bits (26), Expect = 1e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgcatgccatttgcatagctca 44
|||||||||||||| |||||||||||| ||||||
Sbjct: 4 tgcctggctccctgtatgccatttgcaaagctca 37
>RF00247;mir-160;ABIM01012188.1/1387-1471 3649:Carica papaya
(papaya)
Length = 85
Score = 50.1 bits (25), Expect = 5e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 9 tgtgcctggctccctgcatgccatttgca 37
|||||||||||||||| ||||||||||||
Sbjct: 2 tgtgcctggctccctgtatgccatttgca 30
>RF00247;mir-160;AASG02001090.1/34048-34133 3988:Ricinus communis
(castor bean)
Length = 86
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 8 gtgtgcctggctccctgcatgccatttg 35
||||||||||||||||| ||||||||||
Sbjct: 1 gtgtgcctggctccctgtatgccatttg 28
>RF00247;mir-160;AC148995.2/105120-105205 3880:Medicago truncatula
(barrel medic)
Length = 86
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 8 gtgtgcctggctccctgcatgccatttg 35
||||||||||||||||| ||||||||||
Sbjct: 1 gtgtgcctggctccctgtatgccatttg 28
>RF00247;mir-160;CAAP02000723.1/67959-67874 29760:Vitis vinifera
Length = 86
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgcatgccatttgca 37
|||||||||||||| ||||||||||||
Sbjct: 4 tgcctggctccctgtatgccatttgca 30
