miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00647;MIR164;AARH01006944.1/110052-110208 3694:Populus
           trichocarpa
          Length = 157

 Score =  307 bits (155), Expect = 2e-83
 Identities = 155/155 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtgagcaagatggagaagcagggcacgtgcattactaactcatgcacacagagtgagaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   gtgagcaagatggagaagcagggcacgtgcattactaactcatgcacacagagtgagaga 60

                                                                       
Query: 61  gacatttcttgctggagttatgactcttacctactatagattgtgttggcttcagcgagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  gacatttcttgctggagttatgactcttacctactatagattgtgttggcttcagcgagt 120

                                              
Query: 121 tagttcttcatgtgcctgtcttccccatcatgatc 155
           |||||||||||||||||||||||||||||||||||
Sbjct: 121 tagttcttcatgtgcctgtcttccccatcatgatc 155




>RF00647;MIR164;AY728403.1/144-291 3694:Populus trichocarpa
          Length = 148

 Score =  139 bits (70), Expect = 1e-32
 Identities = 128/148 (86%), Gaps = 7/148 (4%)
 Strand = Plus / Plus

                                                                       
Query: 9   gatggagaagcagggcacgtgcattactaactcatgcacacagagtgagagagacatttc 68
           ||||||||||||||||||||||| ||||||||||||||||||||| | ||||  ||||||
Sbjct: 1   gatggagaagcagggcacgtgcactactaactcatgcacacagagagggagacgcatttc 60

                                                                       
Query: 69  ttgctg-------gagttatgactcttacctactatagattgtgttggcttcagcgagtt 121
           ||||||       |||||| |||||||||||||||| |||| |||| ||| ||| |||||
Sbjct: 61  ttgctggagttacgagttacgactcttacctactattgattttgttagctccagtgagtt 120

                                       
Query: 122 agttcttcatgtgcctgtcttccccatc 149
           |||| |||||||||||||||||| ||||
Sbjct: 121 agttattcatgtgcctgtcttcctcatc 148




>RF00647;MIR164;EU421160.1/170-25 29780:Mangifera indica (mango)
          Length = 146

 Score = 95.6 bits (48), Expect = 2e-19
 Identities = 48/48 (100%)
 Strand = Plus / Plus

                                                          
Query: 3  gagcaagatggagaagcagggcacgtgcattactaactcatgcacaca 50
          ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3  gagcaagatggagaagcagggcacgtgcattactaactcatgcacaca 50



 Score = 50.1 bits (25), Expect = 9e-06
 Identities = 34/37 (91%)
 Strand = Plus / Plus

                                                
Query: 117 gagttagttcttcatgtgcctgtcttccccatcatga 153
           ||||||||| ||||||||||  |||||||||||||||
Sbjct: 106 gagttagtttttcatgtgcccatcttccccatcatga 142




>RF00647;MIR164;ABIM01008908.1/593-707 3649:Carica papaya (papaya)
          Length = 115

 Score = 91.7 bits (46), Expect = 3e-18
 Identities = 46/46 (100%)
 Strand = Plus / Plus

                                                        
Query: 2  tgagcaagatggagaagcagggcacgtgcattactaactcatgcac 47
          ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2  tgagcaagatggagaagcagggcacgtgcattactaactcatgcac 47



 Score = 65.9 bits (33), Expect = 2e-10
 Identities = 36/37 (97%)
 Strand = Plus / Plus

                                                
Query: 117 gagttagttcttcatgtgcctgtcttccccatcatga 153
           |||||||||||||||||||| ||||||||||||||||
Sbjct: 75  gagttagttcttcatgtgcccgtcttccccatcatga 111




>RF00647;MIR164;AASG02020922.1/1372-1495 3988:Ricinus communis
          (castor bean)
          Length = 124

 Score = 91.7 bits (46), Expect = 3e-18
 Identities = 46/46 (100%)
 Strand = Plus / Plus

                                                        
Query: 1  gtgagcaagatggagaagcagggcacgtgcattactaactcatgca 46
          ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  gtgagcaagatggagaagcagggcacgtgcattactaactcatgca 46



 Score = 61.9 bits (31), Expect = 2e-09
 Identities = 34/35 (97%)
 Strand = Plus / Plus

                                              
Query: 119 gttagttcttcatgtgcctgtcttccccatcatga 153
           |||||||||||||||||| ||||||||||||||||
Sbjct: 86  gttagttcttcatgtgcccgtcttccccatcatga 120




>RF00647;MIR164;CAAP02000884.1/12240-12399 29760:Vitis vinifera
          Length = 160

 Score = 83.8 bits (42), Expect = 6e-16
 Identities = 45/46 (97%)
 Strand = Plus / Plus

                                                        
Query: 2  tgagcaagatggagaagcagggcacgtgcattactaactcatgcac 47
          |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 2  tgagcaagatggagaagcagggcacgtgcattactagctcatgcac 47



 Score = 50.1 bits (25), Expect = 9e-06
 Identities = 34/37 (91%)
 Strand = Plus / Plus

                                                
Query: 117 gagttagttcttcatgtgcctgtcttccccatcatga 153
           ||||| ||||||||||||||  |||||||||||||||
Sbjct: 120 gagttggttcttcatgtgcccctcttccccatcatga 156




>RF00647;MIR164;FM163716.1/40-210 3702:Arabidopsis thaliana (thale
          cress)
          Length = 171

 Score = 75.8 bits (38), Expect = 2e-13
 Identities = 41/42 (97%)
 Strand = Plus / Plus

                                                    
Query: 2  tgagcaagatggagaagcagggcacgtgcattactaactcat 43
          |||||||||||||||||||||||||||||||||||| |||||
Sbjct: 2  tgagcaagatggagaagcagggcacgtgcattactagctcat 43



 Score = 50.1 bits (25), Expect = 9e-06
 Identities = 34/37 (91%)
 Strand = Plus / Plus

                                                
Query: 117 gagttagttcttcatgtgcctgtcttccccatcatga 153
           ||||||||||||||||||||  ||||| |||||||||
Sbjct: 131 gagttagttcttcatgtgcccatcttcaccatcatga 167




>RF00647;MIR164;FM163713.1/40-209 3702:Arabidopsis thaliana (thale
          cress)
          Length = 170

 Score = 75.8 bits (38), Expect = 2e-13
 Identities = 41/42 (97%)
 Strand = Plus / Plus

                                                    
Query: 2  tgagcaagatggagaagcagggcacgtgcattactaactcat 43
          |||||||||||||||||||||||||||||||||||| |||||
Sbjct: 2  tgagcaagatggagaagcagggcacgtgcattactagctcat 43



 Score = 50.1 bits (25), Expect = 9e-06
 Identities = 34/37 (91%)
 Strand = Plus / Plus

                                                
Query: 117 gagttagttcttcatgtgcctgtcttccccatcatga 153
           ||||||||||||||||||||  ||||| |||||||||
Sbjct: 130 gagttagttcttcatgtgcccatcttcaccatcatga 166




>RF00647;MIR164;EU548743.1/136-304 3702:Arabidopsis thaliana
          (thale cress)
          Length = 169

 Score = 75.8 bits (38), Expect = 2e-13
 Identities = 41/42 (97%)
 Strand = Plus / Plus

                                                    
Query: 2  tgagcaagatggagaagcagggcacgtgcattactaactcat 43
          |||||||||||||||||||||||||||||||||||| |||||
Sbjct: 2  tgagcaagatggagaagcagggcacgtgcattactagctcat 43



 Score = 50.1 bits (25), Expect = 9e-06
 Identities = 34/37 (91%)
 Strand = Plus / Plus

                                                
Query: 117 gagttagttcttcatgtgcctgtcttccccatcatga 153
           ||||||||||||||||||||  ||||| |||||||||
Sbjct: 129 gagttagttcttcatgtgcccatcttcaccatcatga 165




>RF00647;MIR164;AC150384.17/72119-72271 3880:Medicago truncatula
          (barrel medic)
          Length = 153

 Score = 69.9 bits (35), Expect = 1e-11
 Identities = 38/39 (97%)
 Strand = Plus / Plus

                                                 
Query: 6  caagatggagaagcagggcacgtgcattactaactcatg 44
          |||||||||||||||||||||||||| ||||||||||||
Sbjct: 6  caagatggagaagcagggcacgtgcaatactaactcatg 44



 Score = 58.0 bits (29), Expect = 4e-08
 Identities = 35/37 (94%)
 Strand = Plus / Plus

                                                
Query: 117 gagttagttcttcatgtgcctgtcttccccatcatga 153
           ||||||||||||||||||||  |||||||||||||||
Sbjct: 113 gagttagttcttcatgtgcccctcttccccatcatga 149




>RF00647;MIR164;BABK01024863.1/539-828 34305:Lotus japonicus
          Length = 290

 Score = 69.9 bits (35), Expect = 1e-11
 Identities = 41/43 (95%)
 Strand = Plus / Plus

                                                     
Query: 2  tgagcaagatggagaagcagggcacgtgcattactaactcatg 44
          ||||||||||||||||||||||||||||||  |||||||||||
Sbjct: 2  tgagcaagatggagaagcagggcacgtgcaacactaactcatg 44



 Score = 48.1 bits (24), Expect = 4e-05
 Identities = 33/36 (91%)
 Strand = Plus / Plus

                                               
Query: 118 agttagttcttcatgtgcctgtcttccccatcatga 153
           ||||||| |||||||||||  |||||||||||||||
Sbjct: 251 agttagtacttcatgtgcccctcttccccatcatga 286




>RF00647;MIR164;BABK01001893.1/4565-4271 34305:Lotus japonicus
          Length = 295

 Score = 65.9 bits (33), Expect = 2e-10
 Identities = 42/45 (93%)
 Strand = Plus / Plus

                                                       
Query: 6  caagatggagaagcagggcacgtgcattactaactcatgcacaca 50
          |||||||||||||||||||||||||| | |||||||||| |||||
Sbjct: 6  caagatggagaagcagggcacgtgcaatgctaactcatgaacaca 50



 Score = 50.1 bits (25), Expect = 9e-06
 Identities = 34/37 (91%)
 Strand = Plus / Plus

                                                
Query: 117 gagttagttcttcatgtgcctgtcttccccatcatga 153
           |||||||| |||||||||||  |||||||||||||||
Sbjct: 255 gagttagtgcttcatgtgcccctcttccccatcatga 291




>RF00647;MIR164;FM162586.1/101-259 3451:Aquilegia vulgaris
          Length = 159

 Score = 65.9 bits (33), Expect = 2e-10
 Identities = 33/33 (100%)
 Strand = Plus / Plus

                                           
Query: 5  gcaagatggagaagcagggcacgtgcattacta 37
          |||||||||||||||||||||||||||||||||
Sbjct: 5  gcaagatggagaagcagggcacgtgcattacta 37




>RF00647;MIR164;FM162587.1/172-265 310672:Cabomba aquatica
          Length = 94

 Score = 63.9 bits (32), Expect = 6e-10
 Identities = 32/32 (100%)
 Strand = Plus / Plus

                                          
Query: 5  gcaagatggagaagcagggcacgtgcattact 36
          ||||||||||||||||||||||||||||||||
Sbjct: 5  gcaagatggagaagcagggcacgtgcattact 36




>RF00647;MIR164;BABK01023841.1/800-898 34305:Lotus japonicus
          Length = 99

 Score = 56.0 bits (28), Expect = 1e-07
 Identities = 37/40 (92%)
 Strand = Plus / Plus

                                                  
Query: 4  agcaagatggagaagcagggcacgtgcattactaactcat 43
          |||| ||||||||||||||||||||||| | |||||||||
Sbjct: 4  agcatgatggagaagcagggcacgtgcaatgctaactcat 43




>RF00647;MIR164;FM162590.1/70-202 13333:Amborella trichopoda
          Length = 133

 Score = 54.0 bits (27), Expect = 6e-07
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                     
Query: 9  gatggagaagcagggcacgtgcattac 35
          |||||||||||||||||||||||||||
Sbjct: 9  gatggagaagcagggcacgtgcattac 35




>RF00647;MIR164;ABXC01006074.1/27552-27407 4558:Sorghum bicolor
          (sorghum)
          Length = 146

 Score = 50.1 bits (25), Expect = 9e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 11 tggagaagcagggcacgtgcattac 35
          |||||||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgcattac 35




>RF00647;MIR164;AACV01011837.1/11132-11244 39947:Oryza sativa
          Japonica Group
          Length = 113

 Score = 50.1 bits (25), Expect = 9e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 11 tggagaagcagggcacgtgcattac 35
          |||||||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgcattac 35




>RF00647;MIR164;AM449363.2/29982-30065 29760:Vitis vinifera
          Length = 84

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 9  gatggagaagcagggcacgtgca 31
          |||||||||||||||||||||||
Sbjct: 9  gatggagaagcagggcacgtgca 31




>RF00647;MIR164;AP008211.1/23198775-23198954 39947:Oryza sativa
          Japonica Group
          Length = 180

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 11 tggagaagcagggcacgtgcatt 33
          |||||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgcatt 33




>RF00647;MIR164;EU548763.1/160-261 3702:Arabidopsis thaliana
          (thale cress)
          Length = 102

 Score = 44.1 bits (22), Expect = 6e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 9  gatggagaagcagggcacgtgc 30
          ||||||||||||||||||||||
Sbjct: 9  gatggagaagcagggcacgtgc 30




>RF00647;MIR164;ABXC01006220.1/150732-150882 4558:Sorghum bicolor
          (sorghum)
          Length = 151

 Score = 44.1 bits (22), Expect = 6e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 11 tggagaagcagggcacgtgcat 32
          ||||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgcat 32




>RF00647;MIR164;ABXC01001632.1/56279-56101 4558:Sorghum bicolor
          (sorghum)
          Length = 179

 Score = 44.1 bits (22), Expect = 6e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 11 tggagaagcagggcacgtgcat 32
          ||||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgcat 32




>RF00647;MIR164;AAAA02022630.1/18106-18247 39946:Oryza sativa
          Indica Group
          Length = 142

 Score = 44.1 bits (22), Expect = 6e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 11 tggagaagcagggcacgtgcat 32
          ||||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgcat 32