miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00640;MIR167_1;AARH01008931.1/3492-3395 3694:Populus
trichocarpa
Length = 98
Score = 129 bits (65), Expect = 7e-30
Identities = 80/85 (94%)
Strand = Plus / Plus
Query: 7 tagttgaagctgccaacatgatctgagctttccttaattttcctatacaggaaagactag 66
||||||||||||||| |||||||||| ||||||||||||||||||||| |||||||||||
Sbjct: 10 tagttgaagctgccagcatgatctgaactttccttaattttcctatacgggaaagactag 69
Query: 67 atcatgtggcagtttcacctattga 91
||||||||| ||||||| |||||||
Sbjct: 70 atcatgtggtagtttcatctattga 94
>RF00640;MIR167_1;CAAP02001791.1/44208-44309 29760:Vitis vinifera
Length = 102
Score = 67.9 bits (34), Expect = 2e-11
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 54 caggaaagactagatcatgtggcagtttcacctattga 91
||||||||||||||||||||||||||||||||| ||||
Sbjct: 61 caggaaagactagatcatgtggcagtttcacctgttga 98
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 8 agttgaagctgccaacatgatctgagcttt 37
|||||||||||||| |||||||| ||||||
Sbjct: 11 agttgaagctgccagcatgatctaagcttt 40
>RF00640;MIR167_1;AASG02001065.1/6152-6064 3988:Ricinus communis
(castor bean)
Length = 89
Score = 61.9 bits (31), Expect = 1e-09
Identities = 40/43 (93%)
Strand = Plus / Plus
Query: 49 ctatacaggaaagactagatcatgtggcagtttcacctattga 91
|||| ||||| ||||||||||||||||||||||||||| ||||
Sbjct: 43 ctatccaggagagactagatcatgtggcagtttcacctgttga 85
>RF00640;MIR167_1;ABIM01018604.1/478-580 3649:Carica papaya
(papaya)
Length = 103
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 8 agttgaagctgccaacatgatctgagcttt 37
|||||||||||||| |||||||||||||||
Sbjct: 11 agttgaagctgccagcatgatctgagcttt 40
>RF00640;MIR167_1;BABK01022869.1/1081-990 34305:Lotus japonicus
Length = 92
Score = 46.1 bits (23), Expect = 8e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 56 ggaaagactagatcatgtggcagtttcacct 86
||||||| ||||||||||||||||||||||
Sbjct: 53 ggaaagatcagatcatgtggcagtttcacct 83
>RF00640;MIR167_1;ABIM01012099.1/6617-6710 3649:Carica papaya
(papaya)
Length = 94
Score = 44.1 bits (22), Expect = 3e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 8 agttgaagctgccaacatgatctgagctttcctt 41
|||||||||||||| |||||||| | ||||||||
Sbjct: 11 agttgaagctgccagcatgatctaaactttcctt 44
>RF00640;MIR167_1;AARH01004314.1/38692-38599 3694:Populus
trichocarpa
Length = 94
Score = 44.1 bits (22), Expect = 3e-04
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 3 ctattagttgaagctgccaacatgatctgagctttcct 40
|||| |||||||||||||| |||||||| ||| |||||
Sbjct: 6 ctatcagttgaagctgccagcatgatcttagccttcct 43
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 65 agatcatgtggcagtttcacct 86
||||||||||||||||||||||
Sbjct: 64 agatcatgtggcagtttcacct 85
>RF00640;MIR167_1;AC209507.1/126147-126250 4081:Solanum
lycopersicum
Length = 104
Score = 44.1 bits (22), Expect = 3e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 8 agttgaagctgccaacatgatctgagctttcctt 41
|||||||||||||| |||||||| | ||||||||
Sbjct: 11 agttgaagctgccagcatgatctaaactttcctt 44
>RF00640;MIR167_1;CAAP02000793.1/41456-41548 29760:Vitis vinifera
Length = 93
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 65 agatcatgtggcagtttcacct 86
||||||||||||||||||||||
Sbjct: 63 agatcatgtggcagtttcacct 84
